Pairwise Alignments

Query, 620 a.a., CBS domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 413 a.a., CBS domain-containing protein from Methanococcus maripaludis S2

 Score = 60.5 bits (145), Expect = 1e-13
 Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 10/164 (6%)

Query: 160 PITIDAHATVTQAALLMRNS--RVSSLLVTDNHKLVGILTDKDLRNRVLASGLDGQIAVH 217
           P  +  +  V  AA  M NS  RV+ + + +N KL+GI+TD D+      S L   + + 
Sbjct: 70  PFCVKMNTQVIDAAFEMINSGQRVAPV-IDENDKLIGIITDYDVMKCAAESELLKDVKID 128

Query: 218 QAMTTSPISISSNALIFEAMLLMSEHNIHHLPIIDEQNTDEVKAIGMVTSTDILRGQ-GS 276
           + MT SP++I  +  I +A  LM ++NI  L ++D       K IGMVT  DI++     
Sbjct: 129 KIMTKSPVTIDIDESIGKARSLMMKYNIGRLIVLDMDG----KPIGMVTEDDIVKKVFKP 184

Query: 277 QPLLLIGEIERQR--DLASLISVSKQIPVLLQNLISADARAEEI 318
           +  + +GE+   +   +A  +S+    P++  N+  + A   EI
Sbjct: 185 KTKMTVGELTGNKVPRMAQPVSMIINKPLITANIGDSVAEVAEI 228



 Score = 40.8 bits (94), Expect = 1e-07
 Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 26/172 (15%)

Query: 145 DLATTSRISTLMSSSPITIDAHATVTQAALLMRNSRVSSLLVTD-NHKLVGILTDKDL-- 201
           +L    +I  +M+ SP+TID   ++ +A  LM    +  L+V D + K +G++T+ D+  
Sbjct: 120 ELLKDVKIDKIMTKSPVTIDIDESIGKARSLMMKYNIGRLIVLDMDGKPIGMVTEDDIVK 179

Query: 202 -----RNRVLASGLDGQIAVHQAMTTSPI----SISSNA--LIFEAMLLMSEHNIHHLPI 250
                + ++    L G      A   S I     I++N    + E   ++ + +I  +PI
Sbjct: 180 KVFKPKTKMTVGELTGNKVPRMAQPVSMIINKPLITANIGDSVAEVAEILEQQDIRGIPI 239

Query: 251 IDEQNTDEVKAIGMVTSTDI------LRGQGSQPLLLIGEI-ERQRDLASLI 295
                 D ++  G+VT  DI      LR +    + + G+  E QR+LA  I
Sbjct: 240 F---KNDTLR--GIVTRLDILKYLRDLRAESMVEVEIQGDFDEDQRELAERI 286