Pairwise Alignments

Query, 297 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella amazonensis SB2B

 Score =  161 bits (407), Expect = 2e-44
 Identities = 110/299 (36%), Positives = 158/299 (52%), Gaps = 14/299 (4%)

Query: 1   MFTSLPPLNALRAFESAARLQSITLASKELHVTHGAISKQIRVLEDFLGFALFVRLHKKV 60
           M   LPPLNA++AFE+AAR  S T A++EL VT  A+S QI+ LEDFLG  LF R ++ +
Sbjct: 1   MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSL 60

Query: 61  ELTDEAKRYFPHVQAALQTLSSATADLRSQGSRPQTLAINVLPSLTINWLIPRMEQFKSR 120
            LT+E + YF  ++     LS AT  L ++ S   +L +++ PS  I WL+PR+ +F  +
Sbjct: 61  LLTEEGQSYFLDIKDIFTQLSDATDRLLAR-SAIGSLTVSMSPSFAIQWLVPRLAKFSEK 119

Query: 121 YPHLYVDLSIGDFAVDFSQGR----YDIAIRSSTKLPKGVNYIKLMDEDLCLVCAPSLA- 175
            P    D+ +   AVD  +G      D+AI        G+   KL +E L  VC+P L  
Sbjct: 120 NP----DIDVRIKAVDSEEGSLTDDVDVAIYYGQGSWPGLRADKLRNEVLIPVCSPMLLN 175

Query: 176 --PKLQCIEDINHVTLLKHTTRPELWDYWAEKVGLV-LTQEQTFGVEHFYMLSQAAASGM 232
               L+   D+ H TLL   +R + W  W  + G+  +   Q     H  ++ QAAA G 
Sbjct: 176 GHKPLETPADLKHHTLLHDMSRHD-WQAWFRQCGVTDVNVNQGPIFSHSSLVLQAAAHGQ 234

Query: 233 GAALIPRFFIEEQLANGSLVIPFHSTFTSPYVYYLLTPKSPSLPLKVQAFIEWMLDLFA 291
           G AL         +  G LV+PF     S   YYL+  ++ +   K+ AF EWMLD+FA
Sbjct: 235 GVALGYSVLARPDIKAGRLVVPFQEVLVSKDAYYLVCQQNHAELGKIVAFREWMLDMFA 293