Pairwise Alignments

Query, 297 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 300 a.a., LysR family transcriptional regulator from Herbaspirillum seropedicae SmR1

 Score =  160 bits (404), Expect = 4e-44
 Identities = 104/297 (35%), Positives = 162/297 (54%), Gaps = 17/297 (5%)

Query: 7   PLNALRAFESAARLQSITLASKELHVTHGAISKQIRVLEDFLGFALFVRLHKKVELTDEA 66
           PLNA+RAF +AAR QS TLA+ EL+VTHGAIS+QI+ LE +LG  LF R  ++V LT+  
Sbjct: 7   PLNAIRAFLAAARHQSFTLAAHELNVTHGAISRQIKNLEGYLGMPLFERRTRQVLLTERG 66

Query: 67  KRYFPHVQAALQTLSSATADLRSQGSRPQTLAINVLPSLTINWLIPRMEQFKSRYPHLYV 126
           +++F     AL+ L++A   +  + +  +T+ INV PS  + WLIP +  F  RYP +  
Sbjct: 67  RQFFEEASPALEILANAARRV-MRDAPTRTVVINVRPSFAVRWLIPHLSDFVERYPGIAP 125

Query: 127 DLSIGDFAVDFSQGRYDIAI-RSSTKLPKGVNYIKLMDEDLCLVCAPSLAPKLQCIEDIN 185
            +      V  +   +DIA+ R  T  P+ +   + M+++L LV +P+L   +  +ED++
Sbjct: 126 QVVTSTATVGKAGSSFDIAVRRGETNWPETLKVQRFMEDELVLVASPALLQAMP-LEDVS 184

Query: 186 ----HVTLLKHTTRPELWDYWAEKVGLVLTQEQT-FGVEHFYMLSQAAASGMGAALIPRF 240
               H  LL  + R + W+ W +  GL  ++ Q     +H + + QA   G+G AL P  
Sbjct: 185 GLARHTVLLSRSRRND-WEDWRKLAGLKRSRSQAMLHFDHVHFVLQAVVDGLGVALSPVS 243

Query: 241 FIEEQLANGSLVIPFHSTFTSPYVYYL-LTPKSPSLPLKVQAFIEWMLDLFAPYRNA 296
             +  L +G LV PF     +   YYL +  ++ S   + Q F  W+    A YR A
Sbjct: 244 LADNDLRSGRLVCPFPDLRLTLAPYYLGINAQAGS---EAQLFARWL----AEYRGA 293