Pairwise Alignments

Query, 297 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella sp. ANA-3

 Score =  159 bits (401), Expect = 1e-43
 Identities = 109/295 (36%), Positives = 155/295 (52%), Gaps = 6/295 (2%)

Query: 1   MFTSLPPLNALRAFESAARLQSITLASKELHVTHGAISKQIRVLEDFLGFALFVRLHKKV 60
           M   LPPLNA++AFE+AAR  S T A++EL VT  A+S QI+ LEDFLG  LF R ++ +
Sbjct: 1   MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSL 60

Query: 61  ELTDEAKRYFPHVQAALQTLSSATADLRSQGSRPQTLAINVLPSLTINWLIPRMEQFKSR 120
            LT+E + YF  ++     L+ AT  L ++ S   +L +++ PS  I WL+PR+ +F  +
Sbjct: 61  LLTEEGQSYFLDIKDIFTQLADATDRLLAR-SAIGSLTVSMSPSFAIQWLVPRLSKFSEK 119

Query: 121 YPHLYVDLSIGDFAVDFSQGRYDIAIRSSTKLPKGVNYIKLMDEDLCLVCAPSL--APK- 177
            P + V +   D          D+AI        G+   KL +E L  VC+P L   PK 
Sbjct: 120 NPDIDVRIKAVDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGPKP 179

Query: 178 LQCIEDINHVTLLKHTTRPELWDYWAEKVGL-VLTQEQTFGVEHFYMLSQAAASGMGAAL 236
           L   ED+ + TLL   +R + W  W  + G+  +   Q     H  ++ QAAA G G AL
Sbjct: 180 LSKPEDLKYHTLLHDMSRHD-WQAWFRQCGIHDINVNQGPIFSHSSLVLQAAAHGQGVAL 238

Query: 237 IPRFFIEEQLANGSLVIPFHSTFTSPYVYYLLTPKSPSLPLKVQAFIEWMLDLFA 291
                    +  G LV PF     S   YYL+  ++ +   KV AF EWMLD+FA
Sbjct: 239 GYSVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWMLDMFA 293