Pairwise Alignments

Query, 236 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 248 a.a., alginate biosynthesis regulator AlgR from Pseudomonas aeruginosa PA14

 Score =  108 bits (269), Expect = 1e-28
 Identities = 75/241 (31%), Positives = 127/241 (52%), Gaps = 13/241 (5%)

Query: 5   LIVDDELFAREELADSLSQEADIEIIG-QCSNAIEALQTITKEKPQLVFLDIQMPRISGM 63
           LIVDDE  ARE LA  + Q     ++    SN  EAL  I   KP +V LDI+MP + G+
Sbjct: 4   LIVDDEPLARERLARLVGQLDGYRVLEPSASNGEEALTLIDSLKPDIVLLDIRMPGLDGL 63

Query: 64  ELIAML-DPDTLPKIVFVTAFDEFAVKAFDNHAFDYLLKPIDADRLSKTLKRVRKDLTPQ 122
           ++ A L + +  P ++F TA DEFA++AF   A  YL+KP+ ++ L++ LK+  +    Q
Sbjct: 64  QVAARLCEREAPPAVIFCTAHDEFALEAFQVSAVGYLVKPVRSEDLAEALKKASRPNRVQ 123

Query: 123 AVNLIAPRS------LEHLPCYSGSKLKVIPIQDVEYVFSDLSGIHVACTKGKVHTQLTL 176
              L  P +        H+   +   +++IP+++V +  +D   + +   +G+V     L
Sbjct: 124 LAALTKPPASGGSGPRSHISARTRKGIELIPLEEVIFFIADHKYVTLRHAQGEVLLDEPL 183

Query: 177 KVLEEK--TPLVHCHRQYLISPKAIAEIELLDTG---AEVTTLLGDKVPVSRRYLKSLKQ 231
           K LE++     V  HR  L++ + I  ++    G     +  L GD + VSRR++  +++
Sbjct: 184 KALEDEFGERFVRIHRNALVARERIERLQRTPLGHFQLYLKGLDGDALTVSRRHVAGVRR 243

Query: 232 L 232
           L
Sbjct: 244 L 244