Pairwise Alignments

Query, 236 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 246 a.a., LytTR family DNA-binding domain-containing protein from Lysobacter sp. OAE881

 Score =  117 bits (292), Expect = 3e-31
 Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 17/241 (7%)

Query: 5   LIVDDELFAREELADSLSQEADIEIIGQCSNAIEALQTITKEKPQLVFLDIQMPRISGME 64
           +I DDE  ARE L   L+++  +E++ + ++   AL    + +P LV LDI MP I G+E
Sbjct: 4   VIADDEPLARERLRGLLAEQRGVEVVAEAADGQNALHACAEHRPDLVLLDIAMPGIDGLE 63

Query: 65  L---IAMLDPDTLPKIVFVTAFDEFAVKAFDNHAFDYLLKPIDADRLSKTLKRVR----- 116
               +A  DP   P +VF TA+D  A+ AF+  A DYL+KP+ A+RL+  L+RVR     
Sbjct: 64  AARHLAAFDPR--PAVVFCTAYDAHALSAFEAEAIDYLVKPVRAERLAAALERVRTFAAG 121

Query: 117 --KDLTPQAVNLIAPRSLEHLPCYSGSKLKVIPIQDVEYVFSDLSGIHVACTKGKVHTQL 174
             K+        +  R   HL       L++IPI+DV Y+ ++   + V   +G+   + 
Sbjct: 122 REKNGDGNGAGPVGQRR-SHLCARLRGSLRLIPIEDVHYLHAEEKYVVVHHARGEDLIEE 180

Query: 175 TLKVLEEK--TPLVHCHRQYLISPKAIAEIELLDTGAEVTTLLGDKVP--VSRRYLKSLK 230
           +LK LE++     V  HR  L++   I E+     G     L   K P  VSRR +  LK
Sbjct: 181 SLKSLEDEFGERFVRIHRNCLVARHEIVELRRAPDGHVQAVLRHGKAPLEVSRRCVAGLK 240

Query: 231 Q 231
           +
Sbjct: 241 E 241