Pairwise Alignments

Query, 522 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 550 a.a., M28 family metallopeptidase from Rhodanobacter denitrificans FW104-10B01

 Score =  381 bits (978), Expect = e-110
 Identities = 222/528 (42%), Positives = 307/528 (58%), Gaps = 31/528 (5%)

Query: 5   RFRNDIKNLSSDEFEGRAPTTQGEKLTLDYLSKAFTEMGL------KGAYQGSFLQPVPM 58
           R   ++K LSSD FEGR P T  E  T+DY+       GL      K   +G + Q VP+
Sbjct: 29  RLSAEVKTLSSDAFEGRGPATPAETKTIDYVVAQMKAAGLQPGGDLKDGKRG-WTQAVPL 87

Query: 59  VSYTADEAQQVTLAGLPFKYR------QDLVLSSRHDNGGVNIENAPLVFVGYGVNAPEY 112
                    ++TLA L  K+       Q  V +    +  V IENAPLVFVGYGV APE 
Sbjct: 88  RRSQIIGTPKLTLA-LGDKHEALSQGGQIAVRAPMDGSTAVAIENAPLVFVGYGVKAPER 146

Query: 113 AWNDYQDLDMKGKIAVILVNDPGFARPDSGKFNGKAMTYYGRWSYKFEEASRQGALGALL 172
            W+D++ +D+ GKIAV+LVNDP F     G F GKAMTYYGRW+YK+EEA+RQGALG L+
Sbjct: 147 HWDDFKGVDLHGKIAVVLVNDPDF-ETGHGDFGGKAMTYYGRWTYKYEEAARQGALGLLI 205

Query: 173 IHDTEPASYPWSVVENSWTGPQQDLVLSKAEQDSRV--QVEGWLTLDTATKLFEKAGLSL 230
           +H+T PASY W+ V+NS T    D+V    +Q S V  Q+E W+  D A  +F+ AGL  
Sbjct: 206 VHETAPASYGWATVKNSNTNTMFDIV---RDQPSAVHPQLEAWIQRDLAVAMFKHAGLDF 262

Query: 231 PTLMARA---ADSPINLPLEQTANIAFKNKAEYANSYNVVATLAGSQQADEHILFTGHWD 287
             L  +A   A  P+ L  E + + +FK       S+N+V  + GS+  ++ ++++ HWD
Sbjct: 263 DALKKQAQTRAFKPVTLKGE-SLSASFKVDKSVITSHNIVGRIEGSKHPEQTVIYSAHWD 321

Query: 288 H--IGKDDSKEGDKIYNGAMDNASGIAGILEIARQLADNATQGHGLARSVTFIATTGEEQ 345
           H  +G+ D+K GD+IYNGA+DNA+G A ++E+AR  A          RSV F+  T EE+
Sbjct: 322 HLGVGQPDAK-GDRIYNGAVDNATGTAALIELARAFAHAPRP----ERSVVFLNVTAEEK 376

Query: 346 GLLGSRYYAANPIYPIDKTVAVLNLDSTNIYGKTKDFTIVGKGKSELENYLIDAAKQQNR 405
           GLLGS YYAANP+YP+  T  VLN+D+ + +G  ++FTI G  K  L + LI  AKQ   
Sbjct: 377 GLLGSEYYAANPLYPLATTAGVLNMDALDPHGPARNFTISGSAKLGLLDDLIADAKQYGM 436

Query: 406 IALGEKNPASGGFFRSDHFSFAKLGVPAVFAGGGSEPIDAATADYKTQMQATMKGCYHNV 465
               +  P +G FFRSDHFSFAK GVPA+  G G++ ++      K      +   YH  
Sbjct: 437 SYTADPKPEAGHFFRSDHFSFAKRGVPAISFGSGNDWVNGGLKAGKAAEDEYVAKHYHQP 496

Query: 466 CDEYREDWDLSGAIQDLEVYYQVTRELGNSQDWPGYYPGTEFNNLRPA 513
            DE++  W  +G  +DL++ Y V  +L NS  WP +   +EF  +R A
Sbjct: 497 SDEWQASWSFTGMARDLQLLYAVGSQLANSGQWPDWSKDSEFRGIRDA 544