Pairwise Alignments

Query, 222 a.a., ribonuclease T (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 230 a.a., DNA polymerase III, epsilon subunit (NCBI) from Rhodospirillum rubrum S1H

 Score = 47.8 bits (112), Expect = 2e-10
 Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 28/204 (13%)

Query: 20  VVIDVETAGFNSQT-DALLEIA-VTLLKMDDEGLLGIDKTLHFHIEPFEGANLEPEALAF 77
           +V+D ET G +  T D L+EI  + L+     G       LH ++ P    ++ PEA   
Sbjct: 4   IVLDTETTGLDPATGDRLVEIGCIELINHMPSG-----NDLHLYVNPER--DMPPEAFRV 56

Query: 78  NGIDPTNPLRGAVSEKDAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCD 137
           +G+         +++K  F E+       +  +      ++ HNAAFD  F++  + R  
Sbjct: 57  HGLS-----EAFLADKPLFAEVVD-----EFLAFIGEDRLIIHNAAFDMKFLNAELAR-- 104

Query: 138 LKRSPFHPFATFDTATLAGLAI--GHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFC 195
           LKR P       DT  +A          L   C   G+   ++  H AL D    AE++ 
Sbjct: 105 LKRPPLPMSRALDTLRMAQARFPGAQASLDALCRRFGVDTSSRTKHGALIDCVLLAEVYL 164

Query: 196 YIVNRWKTLGGWPLLATSESEDMD 219
            ++      G  P LA S  +  D
Sbjct: 165 ELIG-----GREPGLALSADKRRD 183