Pairwise Alignments

Query, 442 a.a., tolB protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 436 a.a., translocation protein TolB from Sinorhizobium meliloti 1021

 Score =  211 bits (537), Expect = 4e-59
 Identities = 137/432 (31%), Positives = 223/432 (51%), Gaps = 20/432 (4%)

Query: 14  LCTTPAKAALDIVITEGVDAARPIAVMPFQWQGAGAPPQAIADVVMSDLVRSGTFKPLDE 73
           L  +PA A ++I I +G     PIA+  F     G   Q I+ V+ +DL RSG F P+D+
Sbjct: 21  LIASPANALVEININKGNVEPLPIAITDFL---QGELAQKISGVIAADLKRSGLFAPIDK 77

Query: 74  LGLPQRGIGALAQFDANAWTNVSAEALVVGSVKPYGADQFLVSFELIDLVKAQNQALKGS 133
               ++     A      W  ++A+ALV+G V   G  +    F L D    Q       
Sbjct: 78  GAFIEKISNPDATPRFEDWKVINAQALVIGRVTQEGDGRLKAEFRLWDTFAGQQ------ 131

Query: 134 ANPTELLMDSRQTVISATQFRQYGHRISDIVYEKLTGIRGAFLTRISYVVVNHSQKAAY- 192
                  M  +Q       +R+  H I+D +YE++TG +G F TRI YV  +  + A   
Sbjct: 132 -------MLGQQFYTQPENWRRVAHIIADAIYERITGEKGYFDTRIVYVAESGPKNARKR 184

Query: 193 SLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRRLAYVSFENKKAEIFVQDLYTQVRTKVS 252
            L I D DG N + L  S + +++P +SP+ + + Y+SFEN++  +++  L T  R  V 
Sbjct: 185 QLAIMDQDGANSRALTNSNDIVLTPRFSPNRQEITYMSFENQQPRVYLLQLETGQREVVG 244

Query: 253 SFSGINGAPSFSPDGKSLAVTLSKDGQPEIYVIDIATKAIKRITNHYSIDTEPSWYPDGK 312
           +F G+  AP FSPDG+ + ++L ++G   IY +D+ ++   R+TN  +IDT PS+ PDG 
Sbjct: 245 NFPGMTFAPRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTNTAAIDTSPSYSPDGS 304

Query: 313 SLLFTSERGGRPQLYRVDLNSGKVTRETFEGEWNLGGSI-TPDGRSMIFVNRTNGKFNIA 371
            ++F S+RGG+ QLY +  +    TR +F G+ +    + +P G  + F  ++ GKF+I 
Sbjct: 305 RIVFESDRGGKQQLYVMGADGSGQTRISF-GDGSYSTPVWSPRGDLIAFTKQSGGKFSIG 363

Query: 372 RMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTTHQGKQVLAAVSTD-GRFKARLPAGQ 430
            M       ++LT+   +E P+ APNG ++++   + G       S D   +  +L   Q
Sbjct: 364 VMKPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQNAGAGGPQLYSIDLTGYNEQLVQTQ 423

Query: 431 GEVKSPSWSPFL 442
           G    P+WSP +
Sbjct: 424 GFASDPAWSPLM 435