Pairwise Alignments

Query, 442 a.a., tolB protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 437 a.a., putative protein TolB from Phaeobacter inhibens DSM 17395

 Score =  177 bits (449), Expect = 6e-49
 Identities = 139/453 (30%), Positives = 228/453 (50%), Gaps = 38/453 (8%)

Query: 5   AKWLTLVVLLCTTPAKAA---LDIVITEGVDAARPIAVMPFQWQGAGAPPQA--IADVVM 59
           A  L   V+    PA+A    L I IT+GV    P AV  F  +   A   A  I+ V+ 
Sbjct: 3   ATLLGAAVMTSALPAQAQDGPLRIEITDGVIEPLPYAVPGFVPETPAAAELARDISRVIA 62

Query: 60  SDLVRSGTFKPLDELGLPQRGIGALAQFDANA----WTNVSAEALVVGSVKPYGADQFLV 115
           +DL  +G F+ +         I  +  FDA      W  V+A+AL+ G++   G ++  V
Sbjct: 63  ADLSGTGLFREVPA----SAHISKVTDFDAAVSYADWKAVNAQALITGALSVNG-NRLTV 117

Query: 116 SFELIDLVKAQNQALKGSANPTELLMDSRQTVISATQFRQYGHRISDIVYEKLTGIRGAF 175
            F   D+   +             L    Q   +   +R+  H+++D++Y ++TG  G F
Sbjct: 118 RFRGHDVFAEKE------------LGTGLQFSGTTDGWRRMAHKVADVIYSRITGESGYF 165

Query: 176 LTRISYVVVNHSQKAAYS-LMIADYDGYNEQMLLRSPEPLMSPAWSPDGRRLAYVSFENK 234
            +R+ +V  +  +      L I DYDG N Q L  S   +++P +SP G R+ Y S+E+ 
Sbjct: 166 DSRVVFVSESGPKNDRRKRLAIMDYDGANVQYLTNSASIVLAPRFSPTGDRVLYTSYESG 225

Query: 235 KAEIFVQDLYTQVRTKVSSFSGING-APSFSPDGKSLAVTLSKDGQPEIYVIDIATKAIK 293
             +I V D+ +  R  +S+ +GI   AP F+PDG+++  + S+ G  +I+ ++I T A  
Sbjct: 226 FPQIHVLDVGSVQRRVLSADNGIMSFAPRFAPDGRTVVYSQSQGGNTDIFTMNIDTGART 285

Query: 294 RITNHYSIDTEPSWYPDGKSLLFTSERGGRPQLYRVDLNSGKVTRETFEGEWNLGGSI-T 352
           R+T+  SI+T PS+ PDG  ++F S+R G PQLY +    G+  R +F G    G  + +
Sbjct: 286 RLTSAPSIETAPSFSPDGSQIVFESDRSGAPQLYVMAATGGEARRISF-GAGRYGTPVWS 344

Query: 353 PDGRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTTHQ---G 409
           P G  + F  +  G+F+I  M       ++LT++ LDE P+ +PNG ++++    Q   G
Sbjct: 345 PRGDMIAFTKQNKGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASG 404

Query: 410 KQVLAAVSTDGR--FKARLPAGQGEVKSPSWSP 440
           + +L +V   GR     R P G  +   P+WSP
Sbjct: 405 RALLYSVDVSGRNLKPVRTPDGASD---PAWSP 434