Pairwise Alignments

Query, 442 a.a., tolB protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 446 a.a., Tol-Pal system beta propeller repeat TolB (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  202 bits (514), Expect = 2e-56
 Identities = 152/451 (33%), Positives = 227/451 (50%), Gaps = 36/451 (7%)

Query: 10  LVVLLCTTPAKAA-----LDIVITEGVDAARPIAVMPFQWQGAGAPPQA--IADVVMSDL 62
           L  L  T PA+A      L I ITEGV    PIAV PF  +   A   A  IA VV  DL
Sbjct: 13  LAALFLTGPAQAQGNPGPLRIEITEGVIEPLPIAVPPFLAETPAASQFARDIAQVVADDL 72

Query: 63  VRSGTFKPLDELGLPQRGIGALAQFDANA----WTNVSAEALVVGSVKPYGADQFLVSFE 118
             SG F+ + E       I  +  FD+      W  ++A+ALV GSV      + +V F 
Sbjct: 73  EGSGLFRAIPENAF----ISPITSFDSPVQYADWKAINAQALVTGSVSVASDGRLVVKFR 128

Query: 119 LIDLVKAQNQALKGSANPTELLMDSRQTVISATQFRQYGHRISDIVYEKLTGIRGAFLTR 178
           L D+          S  P   L    Q V S + +R+ GH+++D VY ++TG  G F +R
Sbjct: 129 LFDVF---------SDAP---LGKGLQFVASQSSWRRMGHKVADAVYSRITGEGGYFDSR 176

Query: 179 ISYVVVNHSQKAAYS-LMIADYDGYNEQMLLRSPEPLMSPAWSPDGRRLAYVSFENKKAE 237
           + +V     + A    L I DYDG N Q L  S   +++P +SP G R+ Y S+   + +
Sbjct: 177 VVFVSETGPKNARQKRLAIMDYDGANVQFLTDSSAIVLAPRFSPTGDRVLYTSYATGRPQ 236

Query: 238 IFVQDLYTQVRTKVSSFSG--INGAPSFSPDGKSLAVTLSKDGQPEIYVIDIATKAIKRI 295
           I + D+ +     + S  G  ++ AP FSPDG+S+  +L+  G  +IY  D+++ A  R+
Sbjct: 237 ITLLDVNSVRSQGLGSAQGGEMSFAPRFSPDGRSVVFSLTNGGNSDIYRRDLSSGAQTRL 296

Query: 296 TNHYSIDTEPSWYPDGKSLLFTSERGGRPQLYRVDLNSGKVTRETFEGEWNLGGSI-TPD 354
           T   +I+T PS+ PDG+ ++F S+R G  QLY +    G+  R +F G    G  + +P 
Sbjct: 297 TATPAIETAPSFSPDGRQIVFESDRSGSQQLYVMSATGGEARRISF-GPGRYGTPVWSPR 355

Query: 355 GRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTTHQ---GKQ 411
           G  + F  +  G+F+I  M       ++LTS+ LDESP+ +PNG ++++        G  
Sbjct: 356 GDLIAFTKQNQGRFHIGVMRTDGSEERLLTSSFLDESPTWSPNGRVIMFTRETSGAGGAP 415

Query: 412 VLAAVSTDGRFKARLPAGQGEVKSPSWSPFL 442
            L +V   GR   R+P   G    P+WSP L
Sbjct: 416 SLYSVDISGRNLRRVPT-PGAASDPAWSPLL 445