Pairwise Alignments

Query, 442 a.a., tolB protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 434 a.a., Tol-Pal system beta propeller repeat protein TolB from Ralstonia sp. UNC404CL21Col

 Score =  300 bits (769), Expect = 5e-86
 Identities = 173/428 (40%), Positives = 252/428 (58%), Gaps = 27/428 (6%)

Query: 19  AKAALDIVITEGVDAAR-PIAVMPFQWQGAGAPPQAIADVVMSDLVRSGTFKPLDELGLP 77
           A A L++ I+ GV A++ PIA+  FQ  G    PQ ++ +V +DLVRSG F  +D  G  
Sbjct: 29  AHAQLNVEIS-GVGASQYPIAIANFQ--GEAQAPQNLSAIVRADLVRSGRFSNVDVAGAV 85

Query: 78  QRGIGALAQFDANAWTNVSAEALVVGSVKPYGADQFLVSFELIDLVKAQNQALKGSANPT 137
              +      D  AW +  A A V G+V   G D++ + F L D  K ++    G  + T
Sbjct: 86  ---VPESPAPDLGAWKSKGAAAFVGGTVTRNG-DRYEIRFRLYDTAKGESL---GGLSLT 138

Query: 138 ELLMDSRQTVISATQFRQYGHRISDIVYEKLTGIRGAFLTRISYVVVNHSQKAAYSLMIA 197
                         Q R   H I+D +Y+KL G RG F TR+SYV         + L ++
Sbjct: 139 R----------GPGQLRLAAHEIADYIYQKLIGERGVFATRLSYV---SKVGRRFQLQVS 185

Query: 198 DYDGYNEQMLLRSPEPLMSPAWSPDGRRLAYVSFENKKAEIFVQDLYTQVRTKVSSFSGI 257
           D DG N Q+ L S EP++SP+WSPDG ++AYVSFE+KK  ++V DL    RT +S+  G 
Sbjct: 186 DSDGANPQIALTSNEPIISPSWSPDGTKVAYVSFESKKPVVYVHDLVAGRRTVISNQKGN 245

Query: 258 NGAPSFSPDGKSLAVTLSKDGQPEIYVIDIATKAIKRITNHYSIDTEPSWYPDGKSLLFT 317
           N AP++SPDG+ +AV+LS+DG  ++Y+++     ++R++   +IDTEPS+ PDG+ + FT
Sbjct: 246 NSAPAWSPDGRHVAVSLSRDGNTQVYLVNADGSGLRRLSRSSAIDTEPSFSPDGRYIYFT 305

Query: 318 SERGGRPQLYRVDLN---SGKVTRETFEGEWNLGGSITPDGRSMIFVNRTNGKFNIARMD 374
           S+RGG PQ+YR+ ++   SG   R TF+G +N    ++PDG+ + +++R  G F +   D
Sbjct: 306 SDRGGAPQIYRMSVDGEESGGAQRVTFKGSYNTSPRVSPDGKLLAYISRVGGAFRLYTQD 365

Query: 375 LSTRFMQVLTSTRLDESPSVAPNGTMVIYGTTHQGKQVLAAVSTDGRFKARLPAGQGEVK 434
           LS   +  LT T  DESPS A NG  ++Y T   GK VLAAVSTDGR +  L    GEV+
Sbjct: 366 LSNGDVNALTDTSNDESPSFAANGKFILYATRVGGKSVLAAVSTDGRTRQVLSLQAGEVR 425

Query: 435 SPSWSPFL 442
            P+W PF+
Sbjct: 426 EPAWGPFM 433