Pairwise Alignments

Query, 442 a.a., tolB protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 430 a.a., protein TolB from Burkholderia phytofirmans PsJN

 Score =  294 bits (753), Expect = 3e-84
 Identities = 166/427 (38%), Positives = 236/427 (55%), Gaps = 24/427 (5%)

Query: 19  AKAALDIVITEGVDAARPIAVMPFQWQGAGAPPQAIADVVMSDLVRSGTFKPLDELGLPQ 78
           A A L++++T       PIA   F  +     PQ ++ +V  DL RSG F  +D    P 
Sbjct: 24  AHAQLNVLVTGVGSTQFPIATANFANEANS--PQQVSTIVRQDLQRSGKFTNIDAGSTP- 80

Query: 79  RGIGALAQFDANAWTNVSAEALVVGSVKPYGADQFLVSFELIDLVKAQNQALKGSANPTE 138
             +      D  +W    A A V GSV      Q+ V F+L D VK ++           
Sbjct: 81  --VAETDSVDLGSWKAKGANAFVSGSVNRLPNGQYEVRFKLYDTVKGES----------- 127

Query: 139 LLMDSRQTVISATQFRQYGHRISDIVYEKLTGIRGAFLTRISYVVVNHSQKAAYSLMIAD 198
             +     V   +  R   H+++D +Y KL G RG F TR+SYV+    +   Y L I+D
Sbjct: 128 --LGGLVLVSPESGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGGR---YQLQISD 182

Query: 199 YDGYNEQMLLRSPEPLMSPAWSPDGRRLAYVSFENKKAEIFVQDLYTQVRTKVSSFSGIN 258
            DG +  + L SPEP++SPAWSPDG ++AYVSFE KK  +++ DL T  R  VS   G N
Sbjct: 183 SDGQDAHIALSSPEPIISPAWSPDGTKVAYVSFEKKKPIVYIHDLPTGRRVVVSDQKGNN 242

Query: 259 GAPSFSPDGKSLAVTLSKDGQPEIYVIDIATKAIKRITNHYSIDTEPSWYPDGKSLLFTS 318
            AP++SPDG++LAV LS+ G  +I+ ++     ++R+T   SIDTEP + PDG+S+ FTS
Sbjct: 243 SAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTEPCFSPDGQSIYFTS 302

Query: 319 ERGGRPQLYRVDL---NSGKVTRETFEGEWNLGGSITPDGRSMIFVNRTNGKFNIARMDL 375
           +RGG+PQ+Y++     N+G   R TF G +N    ++PDG+ + +++R  G F +   DL
Sbjct: 303 DRGGQPQIYKMSAQGENAGAAQRVTFTGSYNTSPRVSPDGKQLAYISRVGGGFKLYIQDL 362

Query: 376 STRFMQVLTSTRLDESPSVAPNGTMVIYGTTHQGKQVLAAVSTDGRFKARLPAGQGEVKS 435
                  LT T  DESPS A NG  ++Y T   G+ VLAAVSTDGR +  L    G V+ 
Sbjct: 363 QGNTATGLTDTTHDESPSFAANGQYILYATQVNGRGVLAAVSTDGRTRQVLSVQGGSVRE 422

Query: 436 PSWSPFL 442
           PSW PF+
Sbjct: 423 PSWGPFM 429