Pairwise Alignments

Query, 250 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 254 a.a., TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain from Pseudomonas fluorescens FW300-N2E2

 Score = 92.0 bits (227), Expect = 1e-23
 Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 20/209 (9%)

Query: 56  RLDTLQQEVLDLRGLTEQQNYQIEQMQQRQRQLYDEI-----ANLSSKATATPAAS---- 106
           +L  +Q ++   +G+ E+    I +M+Q   + Y ++       ++    ATP  S    
Sbjct: 44  QLQQMQDQISRQQGVIEELQNDISRMKQENLERYQDLDRRIGTGVAPAPAATPENSPAGG 103

Query: 107 ---VPATPAAVAATANAAASSLSETAS-------YESAVNLVLKERKYDDAIPAFRAFIK 156
               P   A   A A AA ++  E A        Y++A +L+ K + +D A  AF AF++
Sbjct: 104 DLNAPGAAAGAGAAAPAAPAAGGEPADPAKEKLYYDAAFDLI-KAKDFDKASQAFAAFLR 162

Query: 157 QYPDSVYAANANYWLGQLLFNKSEFAEAKQVFNTVVTRFSDSNKRGDSLVKLGMIAEKTG 216
           +YP+S YA NA YWLG++   K +   A Q F  V   +    K  DSL KL  +  + G
Sbjct: 163 KYPNSQYAGNAQYWLGEVNLAKGDLQGAGQAFAKVSQLYPKHAKVPDSLYKLADVERRLG 222

Query: 217 DKAGATQYYQQVVKDYANSAAARIAQQQL 245
                    QQVV  Y  ++AA++AQ+ L
Sbjct: 223 HTDKVKGILQQVVAQYPGTSAAQLAQRDL 251