Pairwise Alignments

Query, 250 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 251 a.a., Tol-Pal cell envelope complex subunit YbgF protein from Herbaspirillum seropedicae SmR1

 Score = 95.9 bits (237), Expect = 7e-25
 Identities = 72/262 (27%), Positives = 120/262 (45%), Gaps = 24/262 (9%)

Query: 1   MKRAVLITAMFFGAGAAVAAPAPVEDLAGGSGDD-----------RLARLERIV--KSRQ 47
           M  A  + ++   A  A  A  P+   AG   DD           ++  L+R V  K+ +
Sbjct: 1   MHTAFKLKSVTVAALLAATAFLPLTARAGLFDDDEARKAILDIRSKIEALQRDVANKADK 60

Query: 48  QSEIDMQRRLDTLQQEVLDLRGLTEQQNYQIEQMQQRQRQLYDEIANLSSKATATPAASV 107
            S + +  R D LQ ++  LRG  E    +I   QQRQ+  Y ++     K         
Sbjct: 61  NSVLTLSDRNDNLQSQIAALRGQIEVLTNEITNAQQRQKDFYVDLDARLRKLE------- 113

Query: 108 PATPAAVAATANAAASSLSETASYESAVNLVLKERKYDDAIPAFRAFIKQYPDSVYAANA 167
              P  V       A  +SE  +Y++A++   K   Y  A  AF  F+K+YP S YA +A
Sbjct: 114 ---PQQVQVDGQTVAVGVSEQQAYDAALSQ-FKGGDYKGAANAFADFLKRYPQSGYAPSA 169

Query: 168 NYWLGQLLFNKSEFAEAKQVFNTVVTRFSDSNKRGDSLVKLGMIAEKTGDKAGATQYYQQ 227
            YW G  L+ + ++  A      VV  + D+ K  D+L+ +     +  DKA A +  +Q
Sbjct: 170 QYWQGNSLYAQRDYKGAIAAQQVVVKNYPDNPKAADALLNIASSQAELKDKAAAKKTLEQ 229

Query: 228 VVKDYANSAAARIAQQQLAAIK 249
           ++  Y N+ AA+  ++++A++K
Sbjct: 230 LIAKYPNTPAAQTGKERMASLK 251