Pairwise Alignments

Query, 590 a.a., DNA damage response helicase (yejH or radD) (from data) from Shewanella oneidensis MR-1

Subject, 932 a.a., Type I site-specific restriction-modification system, R (restriction) subunit and related helicases from Pseudomonas stutzeri RCH2

 Score = 52.0 bits (123), Expect = 1e-10
 Identities = 89/389 (22%), Positives = 162/389 (41%), Gaps = 53/389 (13%)

Query: 8   SVILRDYQQQAVDAAIVHFKKSTDSAVLVLPTGAGKSIVIAELARIARGRVLVLTHVKEL 67
           S+  RDYQ +A+ + +   ++     +LV+ TG GK+        IA    L+     E 
Sbjct: 157 SIAGRDYQIRAIRSVLEGIEQKKRDFLLVMATGTGKTRTC-----IAMVDALMRAGHAER 211

Query: 68  VAQNAQKVGLLTTEASIYSAGLNKKS---SVGKTVVA-----------SIQSAARALGQF 113
           V     ++ L     + +   L  +    +VG+ ++A           ++ +  R   Q 
Sbjct: 212 VLFLVDRIALREQALATFKEHLPNEPRWPNVGEKLIAKDRRIYVATYPTMLNIVRDDVQH 271

Query: 114 NEP--FSLVIIDECHRVSLEKTSQYQQLLSHLQQRNPQLKLLGLTATPYRLGTGWIYKRH 171
             P  F  +++DE HR S+  T  Y ++L + +        LGLTATP  +     ++  
Sbjct: 272 LSPHFFDFIVVDESHR-SIYNT--YGEILDYFKTIT-----LGLTATPTDIIDHNTFQL- 322

Query: 172 YHGKVGSPELGI-FEQCIFELPIRPLIKQGYLTAPTLFD-------GLSAQYDFSQIKAN 223
           +H + G P     FE+ +  +P   L     +   T F         +S +     I   
Sbjct: 323 FHCEDGLPTFAYTFEEAVNRVPPY-LCNFQVMKIQTRFQMEGISKRTISLEDQKKLILQG 381

Query: 224 KNGE---YPEAQVNDLLNHAGRATTAIVKQLIELSHHRQGI-----IIFAATVRHA---E 272
           K+ E   +   Q+   + + G  T  + + + E      G+     I F ++  HA   E
Sbjct: 382 KDIEEINFEGTQLEKQVINKGTNTLIVREFMEECIKDGNGVLPGKTIFFCSSKAHARRIE 441

Query: 273 EIVSQLNKE-HREQTAIVTAQTPD-NERDELIERFKAREL-KFLVNVAVLTTGFDAPHVD 329
           EI  +L  + H E   ++ +  P    +  L+++F   ++ +  ++V +L TG D   + 
Sbjct: 442 EIFDKLYPQYHGELAKVLVSDDPRVYGKGGLLDQFTNNDMPRIAISVDMLDTGIDVREIV 501

Query: 330 LIAILRPTASVSLFQQMIGRGLRICEGKK 358
            +   +P  S + F QMIGRG R+ E  K
Sbjct: 502 NLVFAKPVYSYTKFWQMIGRGTRLLEASK 530