Pairwise Alignments

Query, 590 a.a., DNA damage response helicase (yejH or radD) (from data) from Shewanella oneidensis MR-1

Subject, 1113 a.a., DEAD/DEAH box helicase family protein from Rhodopseudomonas palustris CGA009

 Score = 74.3 bits (181), Expect = 2e-17
 Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 66/369 (17%)

Query: 11  LRDYQQQAVDAAIVHFKKSTDSAVLVLPTGAGKS-IVIAELARIARGRVLVLT---HVKE 66
           LR  Q  A+ AA+ H  +STD A +V+PTG GK+  ++A  AR    R+LV+     ++E
Sbjct: 162 LRRPQIGALHAALAHATRSTDPATIVMPTGTGKTETMLALNARQGFDRLLVVVPTDALRE 221

Query: 67  LVAQNAQKVGLLTTEASIYSAGL-----------------NKKSSVGKTVVASIQSAARA 109
            +A   +  G+L  ++ +  + L                 ++       +V ++  A RA
Sbjct: 222 QIAAKFETFGVLKAQSCLDVSALFPVVTRLTRIPTSIAEVDQIFDSANVIVTTMHIAGRA 281

Query: 110 LGQFNEPF----SLVIIDECHRVSLEKTSQYQQLLSHLQQRNPQLKLLGLTATPYRLGTG 165
                E      S + IDE H +     + ++ L +   +R P + ++  TATP+R    
Sbjct: 282 EPPVQEHMATRASALFIDEAHHIGARTWASFRGLFA---ERTPPIPVVQFTATPFR---- 334

Query: 166 WIYKRHYHGKVGSPELGIFEQCIFELPIRPLIKQGYLTAPTLFDGLSA--QYDFSQIKAN 223
                    + G    G F   I+  P++   ++GY   P  F+ +    Q D  Q   +
Sbjct: 335 ---------EDGRRVDGEF---IYTYPLKKAQQEGYF-KPIRFEAVFGLDQLDADQAIID 381

Query: 224 KNGEYPEAQVNDLLNHAGRATTAIVKQLIELSHHRQGIIIFAATVRHAEEIVSQLNKEHR 283
           K G+   A ++  LNH   A  + +++                  +H   + +    ++R
Sbjct: 382 KLGDVLAADLDAGLNHLAMARCSTIER-----------------AKHLHRLYTLAYPDYR 424

Query: 284 EQTAIVTAQTPDNERDELIERFKARELKFLVNVAVLTTGFDAPHVDLIAILRPTASVSLF 343
               IV +Q    ER E +   +  + + +V V +L  GFD P + + A+     SV++ 
Sbjct: 425 --PVIVHSQQSLKERRENLAALRRFDSRIIVCVDMLGEGFDLPELKIAALHDHHKSVAVT 482

Query: 344 QQMIGRGLR 352
            Q +GR  R
Sbjct: 483 IQFVGRFTR 491