Pairwise Alignments

Query, 197 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 196 a.a., AraC family transcriptional regulator from Pseudomonas fluorescens FW300-N2E3

 Score =  154 bits (390), Expect = 8e-43
 Identities = 83/192 (43%), Positives = 115/192 (59%), Gaps = 12/192 (6%)

Query: 4   VTFYQKSLNVSHLFDGLAPLALRLYLAPVLMQAGYNKLTHFDDTVAWFANP--DWGLGLP 61
           +    + L  S   D +A L++RLYL P L +  + K+T F   V WFA P    GLG+P
Sbjct: 5   IALLNRGLEKSKKLDFVALLSIRLYLLPTLYEGAHAKVTGFSGLVEWFATPVAQGGLGMP 64

Query: 62  MPTLMAALAAGTEFFGAILLLLGLATRLISIPLMITMLVAAFTVHWPNGWLAIADGRSWL 121
           +PTLMA LA GTE  G I + LGL TR+++IPL I M VA  +VHW +GW AIA      
Sbjct: 65  LPTLMATLATGTEVAGLICIALGLFTRIVTIPLAILMTVAGLSVHWSHGWAAIA------ 118

Query: 122 ANDRVLEAGEKLAQAKSLLQEY--GNYDWLTSSGNLVVLNNGIEFAVTYFIMLLALLSLG 179
             D+  EA  +L+   + LQ    G ++++T  G+ ++LNNGIEF VTY +M++ L   G
Sbjct: 119 --DKTTEASMRLSGLMTWLQHSFPGRFNYVTELGDPIILNNGIEFTVTYAVMIMVLFFYG 176

Query: 180 GGRYTSLDYLIA 191
            GRY S D+ +A
Sbjct: 177 AGRYVSADHWLA 188