Pairwise Alignments

Query, 493 a.a., prophage MuSo2, tail sheath protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 498 a.a., phage tail protein from Pseudomonas fluorescens FW300-N2C3

 Score =  281 bits (719), Expect = 4e-80
 Identities = 184/507 (36%), Positives = 271/507 (53%), Gaps = 31/507 (6%)

Query: 1   MSLGSIPNDIKVPLVYIEIDNSNALSGTPALAQKVLV-IGQQLGTGTASPLTLNRITNSE 59
           +   +IP DI+VPL Y E+DNS A S + A+ + ++  +   +       L L    +S 
Sbjct: 3   IGFSNIPADIRVPLFYAEMDNSAANSASSAMRRLIVAQVNDNVAPADVGKLVL---VSSV 59

Query: 60  SQMDALFGKGSMLARSLKMFRKSNDYTDVYALGVADLSAGSAAKGEITIAATTAKAGVIA 119
           +    + G+GSMLA   + +RK++   +++ L +  +  G+ AKG +T   T  ++GV+ 
Sbjct: 60  ALAKNIGGQGSMLASMYETWRKTDPLGEIWCLPLHHVE-GAIAKGVLTFTGTATESGVLN 118

Query: 120 LLIAGESVQVGVDEAATAATIATAMIAKINANTNLPVTAALKAATTETVELTAKWKGQTT 179
           L + G  VQ  +   ATAA  ATA+  KINA  +LPVTA   AA    V L+AKW G + 
Sbjct: 119 LYVGGVRVQAAIVNGATAAQAATALALKINAAADLPVTA---AAAEGVVTLSAKWTGDSG 175

Query: 180 NDIDIRYNYY---DGEQLPQGVTLTVVEMTGGAGTPDMDAVIAAIPNEWYNHIVMPYNDT 236
           NDI +++N     +GE  P G+T  +  MTGGAG PD  A +AA+ +E +  I MP++D 
Sbjct: 176 NDISLQFNRLGKSNGEDTPAGLTTAITAMTGGAGVPDQTAAVAALGDEPFEFIAMPWSDV 235

Query: 237 QSMN---KLRDELVNRWGPLKMIEGIAYTAFRGTFAESGAFGVARNDYLFTCMGTNKAPH 293
            S+N    + D+   RW   K + G  Y+A RGT     A G ARND   T         
Sbjct: 236 ASLNTWQAVMDDNTGRWSWAKQLFGHVYSAKRGTIGTLVAAGQARNDQHMTLQALELGVP 295

Query: 294 SP-WEWAAAYAGQASYSLGIDPARPLQTLVMTSLLPPAKEIQWDPTERNLLLGDGIATYM 352
            P W  AAA A + +  +  D +RP Q+  +  L P     ++  TER  LL  GIAT  
Sbjct: 296 QPFWVQAAALAARTAVFISADASRPTQSGSLPGLDPAPASERFTLTERQSLLNYGIAT-A 354

Query: 353 VTPSGEVAIEREVSMYRENSYGDPDPSYLDITTPATLGYLRYSLRVMVTNRFPRHKLAGD 412
               G V I+R ++ Y++N++G  D SYLD  T     ++   L+ ++T+++ RHKLA D
Sbjct: 355 YYEGGYVRIQRSITTYQKNAFGQADNSYLDSETMHQSAFIVRRLQSVITSKYGRHKLASD 414

Query: 413 DVLARLDPGQPVVTPKIMRN------AMLELANNDWVPKGLMEDFDGFKETLEVYRDSSD 466
               R   GQP+VTP  +R       A LEL       +G +E+ + F E L V RDS D
Sbjct: 415 G--TRFGAGQPIVTPSTIRGELIAQYAKLEL-------EGHVENAELFAEHLVVERDSQD 465

Query: 467 QNRLNCVFKPDIVNQFRIFAALMQFKL 493
            +R+N +F PD +N  R+FA L QF+L
Sbjct: 466 PSRVNVLFPPDYINGLRVFALLNQFRL 492