Pairwise Alignments

Query, 372 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 378 a.a., tRNA-specific 2-thiouridylase MnmA from Xanthomonas campestris pv. campestris strain 8004

 Score =  384 bits (985), Expect = e-111
 Identities = 196/355 (55%), Positives = 237/355 (66%), Gaps = 3/355 (0%)

Query: 12  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEYCAAAEDLKDAQAVCDKLG 71
           + IVG+SGGVDSSV+A+ L Q G  + GLFM+NW +D + + C A +D +DA AVC  LG
Sbjct: 5   RTIVGVSGGVDSSVAAWKLAQDGEPIAGLFMQNWADDGSGD-CRAEDDRRDAVAVCGVLG 63

Query: 72  IKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADYIAM 131
           I  H  +F+ EYW  VFE+FLAEY AGRTPNPD++CN+E+KFK FLE A   L A+ IA 
Sbjct: 64  IPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLEAAQ-ALGAERIAT 122

Query: 132 GHYVRRRDNEDGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGELEKHEVREIAKQM 191
           GHY R   +  G  ++LRG D NKDQSYFL+ L   Q+A +LFP+GELEK  +R IA+  
Sbjct: 123 GHYARVA-HLGGRWRLLRGADRNKDQSYFLHQLGQSQLAATLFPIGELEKSALRRIAQDA 181

Query: 192 GLITHDKKDSTGICFIGERKFTEFLGNYLPAQPGNIETADGEVIGTHQGLMYHTLGQRKG 251
           GL TH KKDSTGICFIGER F EFLG YLPA+ G I    G+ I  H G+ Y TLGQR+G
Sbjct: 182 GLPTHAKKDSTGICFIGERDFREFLGRYLPARTGEIRDPQGQRIAEHPGVFYFTLGQREG 241

Query: 252 LGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGMLVNQLHWVDRKGPINGSQ 311
           L IGG++     PWYVV KD+  NVL V Q    P L S  +   Q HWV    P     
Sbjct: 242 LNIGGVRGRAAAPWYVVGKDVGSNVLYVDQDRDSPLLQSRWLQSEQAHWVTGAPPARSFS 301

Query: 312 IVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQSAVFYDGEVCLGGGII 366
              +TRYRQ D PCT+T  DD TL+V F+ P  AVTPGQS V YDGE CLGG +I
Sbjct: 302 CTAQTRYRQPDEPCTVTVQDDGTLQVNFERPQRAVTPGQSLVLYDGEECLGGAVI 356