Pairwise Alignments

Query, 372 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 398 a.a., tRNA-specific 2-thiouridylase MnmA from Sinorhizobium meliloti 1021

 Score =  199 bits (506), Expect = 1e-55
 Identities = 125/372 (33%), Positives = 193/372 (51%), Gaps = 27/372 (7%)

Query: 12  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEED---DNDEYCAAAEDLKDAQAVCD 68
           +V+V MSGGVDSSV A LL ++GY V G+ ++ ++          C A +D+ DA+ VC+
Sbjct: 14  RVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCCAGQDIDDARRVCE 73

Query: 69  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADY 128
            +GI  + +++ A + + V   F   Y AG TP P + CN+ +KF   L  A + L AD 
Sbjct: 74  TIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFADLLATAKE-LGADA 132

Query: 129 IAMGHYVRRRDNED----GTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184
           +A GHY+R R +      G   + R  D  +DQSYFL+  + EQ+    FP+G L K E 
Sbjct: 133 LATGHYIRSRPSPKPRYAGQRALYRPADAERDQSYFLFATTQEQIDYLRFPLGGLPKSET 192

Query: 185 REIAKQMGLITHDKKDSTGICFIGERKFTEFLGNYLP--AQPGNIETADGEVIGTHQGLM 242
           R +A++MGL+   K DS  ICF+ + K+++ +    P  A  G I   DG V+G H+G++
Sbjct: 193 RALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALAGEIVHLDGRVLGAHEGIL 252

Query: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGMLVNQLHWVD 302
           ++T+GQR+G+G+     +  +P YVV  D +   ++VG       L +  + +  ++W+ 
Sbjct: 253 HYTIGQRRGIGV-----ATGEPLYVVYLDSRSRRVIVGP---KEALETRRVYLRDVNWLG 304

Query: 303 ----RKGPINGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQSAVFYDG- 357
                     G +   K R  ++  P  L   D   L V   E  A V PGQ+   Y G 
Sbjct: 305 DEELEAAAGQGFECFAKVRSTRRPAPAVLK-SDAEGLYVELVEGEAGVAPGQACALYSGT 363

Query: 358 ---EVCLGGGII 366
                  GGG I
Sbjct: 364 GEDARVYGGGFI 375