Pairwise Alignments

Query, 372 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 397 a.a., tRNA 2-thiouridine(34) synthase MnmA from Rhodopseudomonas palustris CGA009

 Score =  210 bits (534), Expect = 6e-59
 Identities = 126/370 (34%), Positives = 209/370 (56%), Gaps = 27/370 (7%)

Query: 12  KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDD---NDEYCAAAEDLKDAQAVCD 68
           +V+V MSGGVDSS +A LL  QGY V G+ ++ ++  +       C A +D+ DA+AV +
Sbjct: 15  RVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGEAIHRKGACCAGQDIHDARAVAE 74

Query: 69  KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADY 128
           ++GI  + +++ + + ++V + F   Y +G TP P I CN+ +KF+  L  A + L A  
Sbjct: 75  RIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSVKFRDLLATARE-LGASA 133

Query: 129 IAMGHYVRRRDNEDGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGELEKHEVREIA 188
           +A GHYV  R  +DG+  ++   D ++DQSYFL+  + EQ+    FP+G++ K + RE+A
Sbjct: 134 LATGHYVSSRRLDDGSRALVCAADRDRDQSYFLFATTREQLQFLRFPLGDMTKPQTRELA 193

Query: 189 KQMGLITHDKKDSTGICFIGERKFTEFLGNYLP--AQPGNIETADGEVIGTHQGLMYHTL 246
           +Q GL   DK DS  ICF+   ++T+ +    P   +PG+I   DG V+G H G+++ T+
Sbjct: 194 RQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGDIVDVDGRVLGQHPGIVHFTV 253

Query: 247 GQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGMLVNQLHWVDRKGP 306
           GQR+GLGI     ++  P YV+  D  +  +VVG       L+ + +++  ++W+   G 
Sbjct: 254 GQRRGLGI-----ASRSPLYVLRLDAAQRQVVVGP---REALLMDRIVLRDINWIG-DGS 304

Query: 307 I-----NGSQIVVKTRYRQQDIPCTLTYLDDN-TLKVVFDEPVAAVTPGQSAVFYDGEV- 359
           +     +G ++ V+ R  +   P  L   +    +++V  E    V+PGQ+ VFYD    
Sbjct: 305 LDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGE--EGVSPGQACVFYDAAEG 362

Query: 360 ---CLGGGII 366
               LGGG I
Sbjct: 363 QARVLGGGFI 372