Pairwise Alignments

Query, 318 a.a., DNA polymerase III, delta prime subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 304 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

 Score =  339 bits (869), Expect = 6e-98
 Identities = 174/305 (57%), Positives = 215/305 (70%), Gaps = 6/305 (1%)

Query: 11  SLPWLDVPRQAFLTQLQTQKVPHAQLVGIDSAYGGELLSVFMARAAMCSQPTHTGGCGFC 70
           ++PWL  P   F   L   ++PHA LVG+D   G  +L   +A+ A+C+ P  +G CG C
Sbjct: 3   AIPWLSQPLADFTALLTAGRMPHAVLVGVDEGLGASMLVNQLAQTALCTSPNVSGPCGQC 62

Query: 71  KSCQLFDAGNHPDFYQIEADGHQIKVDQIRELCSRLSATAQQSGRRVAIIHHSERLNSAS 130
           KSCQLF AGNHPDFY I+ADG QIK+DQIREL +RLS+TAQQ GRRVAII  +ER+N+AS
Sbjct: 63  KSCQLFSAGNHPDFYPIKADGTQIKIDQIRELIARLSSTAQQGGRRVAIIEAAERMNTAS 122

Query: 131 ANALLKTLEEPGKDTLLLLHSDTPARLMATISSRCQRLPFVAPSKTLIKNWLIQQCQIQE 190
           ANALLKTLEEPG +TL+LLHS+TPARL+ T+ SRCQ+L FVAP++  I  WL QQ  +  
Sbjct: 123 ANALLKTLEEPGANTLILLHSNTPARLLPTLQSRCQKLAFVAPNQRQIAAWLAQQ-GLGT 181

Query: 191 DVTWCLSVVGGPLKLAESLQSNSTQPSRYQTLLGFRKDWAQSLSSGHLCASLLIISEQQI 250
           D  WCL VVGGP+KLAE LQ+N         L   RKDW  SLS+GHLCASL  I+E QI
Sbjct: 182 DALWCLPVVGGPIKLAEYLQNN-----YISVLENIRKDWRSSLSTGHLCASLKEIAEDQI 236

Query: 251 IDALKVLYLLLRQILLKNGNQDAYVQAQIGNLAAKVMGMCHSLSAMPSVNYLGLCQSYVL 310
            DALKVLY+ L   L     +D  + +++  LA +VM +CH+LS MPSVNYL LCQ  V 
Sbjct: 237 TDALKVLYVELMAYLAAAAKEDPLLASRLAGLAGEVMSVCHTLSTMPSVNYLALCQKIVS 296

Query: 311 EYRDI 315
           EY+ I
Sbjct: 297 EYQRI 301