Pairwise Alignments

Query, 771 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 388 a.a., MMPL family transporter from Methanococcus maripaludis S2

 Score = 81.3 bits (199), Expect = 9e-20
 Identities = 91/385 (23%), Positives = 165/385 (42%), Gaps = 33/385 (8%)

Query: 395 VRAEAIWRYLAKFATP---KYAIVVIIATIALYFAGLEKANQMKIGDLQGGAPALHQDSR 451
           ++AE I + +A+ +     K   VVI+ TI + F      +Q    D +   P   QD  
Sbjct: 1   MKAEKILQKIAEASERHPLKVVAVVIVLTIFMAFLATGIESQT---DYEKMVP---QDDP 54

Query: 452 YNLDTFFITDHFSITTDVMT----VIVEASPEACTYHD--VLNQIDEFEWLVRNTPGVES 505
             +    I D F  T  +M     V  ++S +     D  VL+ +D  E  + +   + S
Sbjct: 55  VIVALNEIRDEFGGTETIMLGVKLVPSDSSEKVTDIRDPRVLDLVDFLEQDIGSMDMITS 114

Query: 506 TVSLASVAKKVNAGFNEGNPRWEVLPRTTASLVQAIGQIPTTS--GLLNGDCSVMPVYLF 563
             S A + K  N          +V+P   A++      +P +S  G+ N D S++ VY  
Sbjct: 115 VSSRADILKAYNN---------DVIPNDVATVKTIYQNLPESSRDGIFNNDYSMVVVYAT 165

Query: 564 MKDHKAETIETVVAKVKAVAAKMDNDKLQ---FKLASGPVGVMAATNEAVAEAQLPMMIY 620
                A T +  +  VK + +++D   +      + +G   +       + E+Q    + 
Sbjct: 166 TD---AGTDDKKIL-VKDINSRLDEAPIPPGVEVITTGTPALSELLKRMMDESQAVTGLA 221

Query: 621 VYGAVFVLCLISFKSFKATVAVIIPLYVVSTLAQALMTMLNIGLAVSTLPVIALGVGIGV 680
              A+F + L+ F++   +V  +IP+ V    A   M +  I +  +T  + +L +G+G+
Sbjct: 222 SLLAIFTILLLYFRNIVKSVLPLIPVVVAVIWAAGSMAIFKIPMDTATSVMGSLLLGLGI 281

Query: 681 DYGIYILSTMSSKLSNGMPVQQAYYEALVERGSAVIFTGLTLAIGVSTWFFSALKFQMDM 740
           DYG+++      +L +G  + +A   A+V  GSAV+ T  T   G +    + L    +M
Sbjct: 282 DYGVHLFHRYEEELGDGKSMDEAINIAVVSTGSAVLVTTATTMAGFAALTIAPLSMMANM 341

Query: 741 GILLTFMFLVNMLGAIIILPALAAV 765
           G + T      M   I +LP L  +
Sbjct: 342 GKVCTLGIFFCMAAVICLLPPLIVI 366



 Score = 72.0 bits (175), Expect = 5e-17
 Identities = 85/393 (21%), Positives = 174/393 (44%), Gaps = 42/393 (10%)

Query: 3   EKLVNGFESFLFRNRAWVVSIFILVTVFLGYQASQLKMDAAFIKNIPLNHSYMQTYLKHQ 62
           EK++        R+   VV++ I++T+F+ + A+ ++    + K +P +   +    + +
Sbjct: 4   EKILQKIAEASERHPLKVVAVVIVLTIFMAFLATGIESQTDYEKMVPQDDPVIVALNEIR 63

Query: 63  KDFGGANSIMVAVE----DTS---GNIFNPNFFDTLKNVHDQLFFIPGVDRSQVKSLFSP 115
            +FGG  +IM+ V+    D+S    +I +P   D +  +          D   +  + S 
Sbjct: 64  DEFGGTETIMLGVKLVPSDSSEKVTDIRDPRVLDLVDFLEQ--------DIGSMDMITSV 115

Query: 116 STRFTEVVEDGFAGGPVIPADFATTETGLNTVRDNIEKAGIVGRLIANDYSAAMVSAQLM 175
           S+R  ++++       VIP D AT    + T+  N+ ++   G +  NDYS  +V A   
Sbjct: 116 SSR-ADILK--AYNNDVIPNDVAT----VKTIYQNLPESSRDG-IFNNDYSMVVVYATT- 166

Query: 176 DFDPQTGKPLDTIAFAAQLEKELRGKYETDKVKIHIIG---FAKMAGDVADGAKGVLLFF 232
             D  T    D       +   L        V++   G    +++   + D ++ V    
Sbjct: 167 --DAGTD---DKKILVKDINSRLDEAPIPPGVEVITTGTPALSELLKRMMDESQAVT--G 219

Query: 233 VIAILVTAAMVYLFSKSIILTLLPLICSLAAVIWQLGLLTVIGFGLDPMSILVPFLVFAI 292
           + ++L    ++ L+ ++I+ ++LPLI  + AVIW  G + +    +D  + ++  L+  +
Sbjct: 220 LASLLAIFTILLLYFRNIVKSVLPLIPVVVAVIWAAGSMAIFKIPMDTATSVMGSLLLGL 279

Query: 293 GVSHGVQIINAVKRRVMDGQSTKAASASAFRSLLVPGGVALLSDT----VGFITLLFIDI 348
           G+ +GV + +  +  + DG+S       A    +V  G A+L  T     GF  L    +
Sbjct: 280 GIDYGVHLFHRYEEELGDGKSMD----EAINIAVVSTGSAVLVTTATTMAGFAALTIAPL 335

Query: 349 GIIRELAISASLGVGVIILTNLILLPLVISFTE 381
            ++  +    +LG+   +   + LLP +I   E
Sbjct: 336 SMMANMGKVCTLGIFFCMAAVICLLPPLIVIEE 368