Pairwise Alignments

Query, 339 a.a., dihydroorotate dehydrogenase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 352 a.a., dihydroorotate dehydrogenase PyrD from Phaeobacter inhibens DSM 17395

 Score =  248 bits (633), Expect = 2e-70
 Identities = 144/336 (42%), Positives = 201/336 (59%), Gaps = 24/336 (7%)

Query: 4   KIAQKVMFQMDPERAHNLAIGSLRMTGNGPLNAFYAQNITPAPVS-------FMGLTFPN 56
           ++A   + + DPE AH L+I +L+M G  P         TP PV+         GL  PN
Sbjct: 6   RLALAALHRCDPEAAHGLSIKALKM-GLTP---------TPGPVTSPRLATRIAGLDLPN 55

Query: 57  PVGLAAGMDKDGESIDAFHAMGFGHVEVGTVTPRPQPGNDLPRLFRLKPAKAIINRMGFN 116
           PVGLAAG DK+ E++      GFG +EVG  TPRPQPGN  PRLFRL   +A INR GFN
Sbjct: 56  PVGLAAGFDKNAEALRPLSQAGFGFIEVGAATPRPQPGNPKPRLFRLTEDQAAINRFGFN 115

Query: 117 NKGVDNLVKNLIAKKTDIMVGVNIGKNKDTPVEQGKDDYLICMDKVYLHAAYIAVNISSP 176
           N+G+  + + L  +  D ++G+N+G NKD+       D+   +     H  +  VN+SSP
Sbjct: 116 NEGMAVIGQRLAVRPQDAVIGLNLGANKDSGDRAA--DFAKVLAHCGEHLDFATVNVSSP 173

Query: 177 NTPGLRSLQYGDLLDELLSAIKAKQLELADKHKKYVPIALKIAPDLTIEEIENIAQALIK 236
           NT  LR LQ    L  LL+ +    ++  D   + VP+ LKIAPDL    IE+IA+  ++
Sbjct: 174 NTEKLRDLQGKAALSALLNGV----IDTRDGLDRRVPVFLKIAPDLDRAGIEDIAEVAVE 229

Query: 237 NQFDGAIATNTTLTRDGVSGLANANESGGLSGKPLTELSTKVIKQLATCLQGQIPIIGVG 296
              D  IATNTTL R G++  ++ +E+GGLSG PL E ST+V+ QL+  L G++P++GVG
Sbjct: 230 TGIDAVIATNTTLKRTGLNS-SHRDEAGGLSGAPLFEKSTRVLAQLSELLNGRVPLVGVG 288

Query: 297 GINSAEDALAKFDAGATMVQIYSGFIYQGPKLIKEI 332
           GI++AE A AK  AGA+ VQ Y+  +Y G  L+ +I
Sbjct: 289 GISNAEQAYAKICAGASAVQFYTAMVYGGLSLVGDI 324