Pairwise Alignments

Query, 242 a.a., DNA polymerase III, epsilon subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 247 a.a., DNA polymerase III subunit epsilon from Vibrio cholerae E7946 ATCC 55056

 Score =  272 bits (696), Expect = 4e-78
 Identities = 143/248 (57%), Positives = 176/248 (70%), Gaps = 9/248 (3%)

Query: 1   MNIISNASRQ--VILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINPG 58
           MN  +NA  Q  V+LDTETTGMN+  G  Y GHRIIEIG VE+INR+LTGR++H Y+ P 
Sbjct: 1   MNTSNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD 60

Query: 59  QAIDPEAIAVHGITDERVANEPRFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQ 118
           + I  EAI VHGITDE + ++P +  + +EF+DFI GAE+VAHNA FDV FMD+EF+ L 
Sbjct: 61  RDIQLEAIEVHGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNAPFDVGFMDYEFAKLG 120

Query: 119 PLGPKTRDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVY 178
               KT D C++ D+L +AK + PG++NNLD LC+RYGIDNS R  HGALLDAEILADVY
Sbjct: 121 GAIGKTSDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVY 180

Query: 179 LSMTGGQTKFNLSNEEVGQEGG-----GIQRFDPTSLNLKVICASADELVMHEKRLDLVA 233
           L MTGGQT    S+  V Q  G      ++R       LKV+ ASADEL  H+ RLD+VA
Sbjct: 181 LLMTGGQTSLQFSS--VTQNSGELSAESLKRARSERKALKVLAASADELQAHQDRLDIVA 238

Query: 234 KSGKCLWR 241
           KSG CLWR
Sbjct: 239 KSGTCLWR 246