Pairwise Alignments

Query, 460 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 434 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

 Score =  155 bits (392), Expect = 2e-42
 Identities = 116/433 (26%), Positives = 210/433 (48%), Gaps = 39/433 (9%)

Query: 31  MLKTLKAFTNNKEQSTPFRSLFELIAQELKPVVQLLITCNHENDSFYIVSSTDEMLIGRH 90
           +L  +K   +N +    F SL   I+ +L P  Q+ +    ++D  + +  T  + +   
Sbjct: 25  LLAFIKVLFSNVKPKRKFDSLMTTIS-DLVPGCQIALL-ERQSDEHWRIIQTSGLTVETR 82

Query: 91  FQLDDTVNSKPEQSIFSQSTVFFNLNLTPKWPASLKGLLPNAASALIQPVKIASRCYAIV 150
           F+      +     I  +     N+     W        P+  SAL      A   Y ++
Sbjct: 83  FK------TALPPFIEDEWYCMPNVQAEMVWREHYAHCFPDCQSALAAKFHTAENHYLLL 136

Query: 151 LVINEVNGFDAEAKSVMSNYSSFIASTL-TLMEYRHIAAERDTLFAQQKRIEQSMARQGK 209
           ++   ++GF+   +  +        S L +++++R    ++             + ++ K
Sbjct: 137 IMQPMLDGFNHSQRDELYALFDVTKSALYSMLQFRKTVIDK-----------HQVQQEEK 185

Query: 210 LAAIGQLAAGVAHELNNPLGFIYSNLNTFELYLKDINTFLMEVCNSHPNAIKLYNKHNLD 269
           LA++G+LAAGVAHE+NNPLGF+ SN +    Y+  I          HP  I+      L 
Sbjct: 186 LASLGKLAAGVAHEINNPLGFVMSNFSFLNEYVAQIR--------QHPQ-IQPIADPRLH 236

Query: 270 FILKDSSELINESLAGARRARDIIKNLRNFSHPDENTISTINILELITDTVRIANTQVKK 329
            ++ DS  ++ ESL G  R ++I+ +L  +SH  EN ++ I++ ++++  + +    +K 
Sbjct: 237 EMIADSEAILMESLEGLSRIKNIVSSLNVYSHTHEN-MAEIDMRDVLSSALALIIGDLKY 295

Query: 330 HARIKINHDLHHAFTQGNATQLSQVILNLINNAHHSIKH-QHGLIEISINKFNNW----- 383
            A+          + +G+  +L QV +NLI NA  S+   Q G++ + + +   W     
Sbjct: 296 RAQFVYPAPEKPYYIRGSYNKLQQVFINLIINAVQSVSATQEGVVRLELCEVR-WPGEGI 354

Query: 384 --INIEIEDNGCGIDDTDIPHIFEPFFTTKEIGQGTGLGLSISRAIIEQHNGCIALVHTG 441
             + + IEDNG GI    +  +F+PFFTTK++G G GLGLS++R IIE+H+G I L  T 
Sbjct: 355 PRVQVLIEDNGKGISAEHLEKVFDPFFTTKKVGDGAGLGLSVAREIIEEHHGKIKLCSTE 414

Query: 442 LKGTKFVISLPES 454
             GT+  ++LP++
Sbjct: 415 GVGTRVFVTLPQA 427