Pairwise Alignments

Query, 460 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 439 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

 Score =  186 bits (473), Expect = 1e-51
 Identities = 106/268 (39%), Positives = 162/268 (60%), Gaps = 14/268 (5%)

Query: 198 KRIEQS---MARQGKLAAIGQLAAGVAHELNNPLGFIYSNLNTFELYLKDINTFLMEVCN 254
           K++E +   + +  K+A+IGQL+AG+AHE+NNP+GFI SNL T   Y   +   L  +  
Sbjct: 157 KKLEDAQGQLIQSEKMASIGQLSAGIAHEINNPVGFITSNLQTLSDYFNSLEKVLKSITQ 216

Query: 255 ----SHPNAI-----KLYNKHNLDFILKDSSELINESLAGARRARDIIKNLRNFSHPDEN 305
               S   A+     K+  +  +DFIL+D++ELI ESL G+ R   I+KNL+ FSH D +
Sbjct: 217 TIGQSKDTALNEACQKILKQGQVDFILEDTAELITESLEGSSRVMSIVKNLKEFSHVDRS 276

Query: 306 TISTINILELITDTVRIANTQVKKHARIKINHDLHHAFTQGNATQLSQVILNLINNAHHS 365
             S  N+   I  T++I N ++K +  ++ ++  +         Q++QV+LN++ NA H+
Sbjct: 277 EWSYANLENCIESTLKIINNEIKYNITLEKHYAANVPDVFCQPMQINQVLLNILVNASHA 336

Query: 366 IKHQHGLIEISINKF-NNWINIEIEDNGCGIDDTDIPHIFEPFFTTKEIGQGTGLGLSIS 424
           IK + G I I++    ++++ I I D GCGI +     IFEPFFTTK +G GTGLGLS+S
Sbjct: 337 IKGE-GTITITLQSAGDDFVEIHIRDTGCGIPEEIRERIFEPFFTTKPVGSGTGLGLSVS 395

Query: 425 RAIIEQHNGCIALVHTGLKGTKFVISLP 452
             II +HNG I++     KG++F I LP
Sbjct: 396 YGIINKHNGTISVTSEVGKGSEFTIRLP 423