Pairwise Alignments

Query, 533 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 521 a.a., ABC transporter ATP-binding protein uup from Pseudomonas fluorescens FW300-N2E2

 Score =  676 bits (1745), Expect = 0.0
 Identities = 326/518 (62%), Positives = 416/518 (80%), Gaps = 2/518 (0%)

Query: 9   MQFGPEPLFENISAKFGNGNRYGLIGANGCGKSTFMKILSGALAPTSGNVSITPGLKVGT 68
           MQFG +PLFEN+S KFG GNRYGLIGANGCGKSTFMKIL G L P+ G V + P +++G 
Sbjct: 1   MQFGAKPLFENVSVKFGAGNRYGLIGANGCGKSTFMKILGGDLEPSGGQVMLEPNVRLGK 60

Query: 69  LSQDQFAFEQYTVIDAVIMGDTQLWKIKQERDAIYAKPDMSEEDGMRVGDLESEFAEMDG 128
           L QDQFA+E++TVID VIMG  +LWK+K ERD IY+ P+M+EEDGM V +LE+EFAEMDG
Sbjct: 61  LRQDQFAYEEFTVIDTVIMGHEELWKVKAERDRIYSLPEMTEEDGMAVAELETEFAEMDG 120

Query: 129 YSAESRAGEILIEAGIEESFHYGPMSQVAPGWKLRVLLAQALFANPDILLLDEPTNNLDI 188
           Y+AESRAGE+L+  GI    H+GPMS+V+PGWKLRVLLAQALF++P++LLLDEPTN+LDI
Sbjct: 121 YTAESRAGELLLGLGIGIEQHFGPMSEVSPGWKLRVLLAQALFSDPEVLLLDEPTNHLDI 180

Query: 189 HTISWLETELNKRKCTMIIISHDRHFLNAVCTHMADIDYGELRIYPGNYDYFLAQSALLR 248
           +TI WLE  L +R   MIIISHDRHFLN+VCTHMAD+DYGELR++PGNYD ++  +   R
Sbjct: 181 NTIRWLENVLTQRSSLMIIISHDRHFLNSVCTHMADLDYGELRLFPGNYDEYMTVATQSR 240

Query: 249 EQLLAGNAKKSAEIEELQDFVNRFGANASKAKQASSRAKRMDKIKLDEVKSSSRITPSIR 308
           EQLL+ NAKK A+I ELQ FV+RF ANASKAKQA+SRAK++DKI+L EVK SSR++P IR
Sbjct: 241 EQLLSDNAKKKAQISELQSFVSRFSANASKAKQATSRAKQIDKIQLAEVKPSSRVSPFIR 300

Query: 309 FAPGKKMHRQALVLENLGHGFDGERLFEGGDLILEAGAKLAIIGENGVGKTTLLRCLVNE 368
           F   KK+HRQA+++E +  GFDG+ LF+     +EAG ++AIIG NG+GKTTLLR LVNE
Sbjct: 301 FEQTKKLHRQAVIVERMAKGFDGKPLFKDFSFTVEAGERVAIIGPNGIGKTTLLRTLVNE 360

Query: 369 LIHNEGTIKWSENAAIGYCPQDSTSDFDNDLTIIEWMDQWRQPKHNDLMVRAMLGRLLFT 428
           L  + GT+KW++ A +GY  QD   DF++D+ + +WM QW Q    + +VR  LGR+LF+
Sbjct: 361 LEPDAGTVKWTDAAELGYYAQDHAHDFEDDVNLFDWMGQWTQ--GGEQLVRGTLGRMLFS 418

Query: 429 EDDANKKAKNCSGGEKNRLIFGKLMMQDINVIIMDEPTNHMDMEAIEALNNALKDFEGTL 488
            D+  K  K  SGGE+ R++FGKL++Q  NV++MDEPTNH+DME+IEALN AL+++ GTL
Sbjct: 419 NDEILKSVKVISGGEQGRMLFGKLILQKPNVLVMDEPTNHLDMESIEALNLALENYPGTL 478

Query: 489 IFVSHDREFVSSLATRIIDIKDKKLVNFQGTFDEYLAS 526
           IFVSHDREFVSSLATRII++    +V+F GT+D+YL S
Sbjct: 479 IFVSHDREFVSSLATRIIELSADGVVDFSGTYDDYLRS 516



 Score = 81.3 bits (199), Expect = 8e-20
 Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 47/242 (19%)

Query: 11  FGPEPLFENISAKFGNGNRYGLIGANGCGKSTFMKILSGALAPTSGNVSITPGLKVGTLS 70
           F  +PLF++ S     G R  +IG NG GK+T ++ L   L P +G V  T   ++G  +
Sbjct: 321 FDGKPLFKDFSFTVEAGERVAIIGPNGIGKTTLLRTLVNELEPDAGTVKWTDAAELGYYA 380

Query: 71  QDQFAFEQYTVIDAVIMGDTQLWKIKQERDAIYAKPDMSEEDGMRVGDLESEFAEMDGYS 130
           QD                                             D E +    D   
Sbjct: 381 QDH------------------------------------------AHDFEDDVNLFDWMG 398

Query: 131 AESRAGEILIEAGIEESFHYGP-----MSQVAPGWKLRVLLAQALFANPDILLLDEPTNN 185
             ++ GE L+   +             +  ++ G + R+L  + +   P++L++DEPTN+
Sbjct: 399 QWTQGGEQLVRGTLGRMLFSNDEILKSVKVISGGEQGRMLFGKLILQKPNVLVMDEPTNH 458

Query: 186 LDIHTISWLETELNKRKCTMIIISHDRHFLNAVCTHMADIDYGELRIYPGNYDYFLAQSA 245
           LD+ +I  L   L     T+I +SHDR F++++ T + ++    +  + G YD +L    
Sbjct: 459 LDMESIEALNLALENYPGTLIFVSHDREFVSSLATRIIELSADGVVDFSGTYDDYLRSQG 518

Query: 246 LL 247
           ++
Sbjct: 519 VV 520