Pairwise Alignments

Query, 943 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 942 a.a., TonB-dependent receptor, plug (RefSeq) from Shewanella loihica PV-4

 Score =  199 bits (507), Expect = 5e-55
 Identities = 229/935 (24%), Positives = 376/935 (40%), Gaps = 131/935 (14%)

Query: 119 DKQTTLQDISLNSQDD-VEHIRVVGQQGALSKSMNRQRGADNVLSVVSADVLGNFPDSNI 177
           D +    + +  +QD+ +E I V G + ++ KS+N +R AD V   +SAD LG  PD +I
Sbjct: 26  DNEAAKAEAAATTQDESIEVIEVRGFRTSVIKSLNNKRFADTVSETISADDLGALPDQSI 85

Query: 178 SESLQRVPGLSIERDQGEGRFVRVRGMAPDYNSVSMNGTRLPSPESDRRAVALDVVPSDL 237
           +++L R+PG++  R  G+   + +RG+  D+ + ++NG R       +RA+  D  PS+L
Sbjct: 86  ADALTRLPGVTAVRTGGQASGLNIRGLDGDFVAATLNG-REQVTTGGKRAIEFDQYPSEL 144

Query: 238 LQSVEVSKTLTPDMDADALGGAIEVKSLSAFD--RDDTYL-----NLNTEASQDTLTDNI 290
           +   +V K+    +    + G +E+K+       +D  +      + N  A +    +  
Sbjct: 145 INQAQVYKSPKASLIEGGVAGTVELKTADPLQAPKDHNFTVNARGSFNDRAGEIADAEEY 204

Query: 291 NPKLAASY-SDIIAENLGIA----------IATSWYNRDFGSDNVETGGDWAFAEDS-GF 338
             +L+ SY    + E LG+A          +A+ +    F  D  +  GD      S GF
Sbjct: 205 GNRLSFSYQGKFLDETLGVAVGYAHLYQPYVASQFIGLRFNDDRRDVNGDGNLESISEGF 264

Query: 339 DDAALASVDARDYEINRERLGVGVNFDYRPSDDTDLYLRTLYSEFDDTETRNSAKTK-WK 397
           +       D RD        G      ++P+D+        +S+FD        + K  K
Sbjct: 265 EMQQKGGTDTRD--------GYMGAIHWQPNDNWSFKGDIFHSKFDSENFARGFRVKSLK 316

Query: 398 SAQQADAL-SQGKTTRSLKSRTENQNITSFVLGGQ----------------TRFDRWTFD 440
           + Q +DA+   G       S     N   FV+                   T  +  T  
Sbjct: 317 NGQISDAIVEDGSMIGGTVSTDGTDNFAVFVVNDNDSKYSELTSGAVNIEWTNGENLTIA 376

Query: 441 YQASHSSASAEKPR---------DIAGADFVAKIDNTGFSNTQTPQIIAPEDYYQNANFE 491
              S+SSA  E            D+A     A+      +N     I   +DY   +   
Sbjct: 377 ADISYSSADGEFVNGGTRAVIYDDMANNVRSAESITYKLNNLNPADISFAKDYTDTSTLG 436

Query: 492 LDEIEIAASKAEDTINAVNVDLTRQLTLGDYSAEVKTGVKVSRRD-KSNREDIWIYSDLG 550
           L E+ +     ++ + A  +DL  QL    + + +  GV+ S R+  + R       + G
Sbjct: 437 LREVGMWPYDQQNDLIAYKLDLNYQLD-NSFVSSIDVGVRYSEREFNAQRSQAGYGFEFG 495

Query: 551 DQ-------GVSDDALLLSQYAGNELDYSLGRFGTGIDSTPVWELVNSLDADDNRDEVES 603
                     ++DD   +  + G    Y        ID     +LVN+  A   +D    
Sbjct: 496 TNPDNQPVLALTDDMTRVVNFGGELSGYP---SFLAIDFDKAVDLVNAQLAATGQDPFVP 552

Query: 604 TIN---------DFDITEDINAAYLMGHMD--IGKLRIL--TGLRVEQNQWDSTG---SG 647
           T N            + ED+ A Y+  ++D  IG + +    GLRV      STG    G
Sbjct: 553 TANWANNWTMIQSGTVNEDVLAGYVQANLDFEIGSIPVTGNIGLRVVNTDQSSTGLQQVG 612

Query: 648 YDGAKDEFIDINHSSDEDH-----------WLPALHLTYRYTDNTVLRAAWTNTLVRPTF 696
           + G  +E +D       D+           +LP+++L +  T N  +R A  + + RP  
Sbjct: 613 F-GLGEEIVDEKGVVSTDYIHNKVGKSYTDYLPSVNLNFHLTQNDQIRFAAASVMARPPI 671

Query: 697 GQLAPGYLLEEDDGDID-----LTFGN--PQLKSLESMNVDLSLEHYF-GNIGLISAGLF 748
            +L  G     DD           +GN  P L    +   DLS EHYF  + G I   +F
Sbjct: 672 DKLKSGMGSWYDDSATPGYKKYNAWGNTSPLLDPFYADQYDLSYEHYFEESEGAIVFAVF 731

Query: 749 YKDIENFIYQADLAGLGDYVDAHSAV---------------------TFVNGDSAD-IYG 786
           YKDI++FI    +    D+ +A   V                     T VN D+   I G
Sbjct: 732 YKDIKSFINNFTIQPF-DFEEAGFIVPDTIVDNGVEFPVVKNEGQYQTAVNNDNGGYIRG 790

Query: 787 LELSYVQEFHFLPEPFNALVLNSNLTYTDSSANISWIEDGQLLSRDIPMPSQSDLTANLS 846
           +EL+Y Q F FLP   + L    +  Y+DS         G+ L+  IP+P  S+   N +
Sbjct: 791 IELAYTQVFDFLPGALSGLGFTGSYAYSDSEVEFETDLSGESLA--IPLPGLSEHVLNTT 848

Query: 847 LGYENSYASVWLSAAYKSEYLQEVTELSDERLDLYQDNHLQWDFVAKAHLTSNVTLYFKG 906
           L Y        LS  Y+SEY+ E  +++ E    + D     D+ A   + + +   F+ 
Sbjct: 849 LFYTLDGFDTRLSMRYRSEYVSE--QVAVESQLAFFDAETILDYQASYAMDNGLKFLFQV 906

Query: 907 VNLTDEPYYSYTGNSAYNAQYEAYGRTFQLGLQYT 941
            NLTDE   +Y G +      +++GR + LG  YT
Sbjct: 907 NNLTDEANKTYFGQTHQTGTIQSFGRQYFLGFSYT 941