Pairwise Alignments

Query, 193 a.a., iron-sulfur cluster-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 50.4 bits (119), Expect = 3e-11
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 103 VKKVAYIREDECIGCTKCIQACPVDAIIGAG-KLMHTVLTADCTGCDLCVEPCPVDCIDM 161
           V++  Y+  ++CI C  C + CPVDAI     K    +L   C  C++C + CPV  I++
Sbjct: 37  VERNLYVESNKCIRCELCYEMCPVDAIKEPSVKSPAEILPEKCVKCEICAKTCPVGAINV 96

Query: 162 VPVTQNLKNWN--WRLNAIPVT 181
           +     L+  N  + L  I VT
Sbjct: 97  LEGRAKLEEDNVVYELKEIDVT 118



 Score = 40.4 bits (93), Expect = 3e-08
 Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 28/151 (18%)

Query: 30  KVEGNPIVDELEAI-------------LPQTQCGQCGYPGCRPYAEAIA------NGDKV 70
           K+E + +V EL+ I             L +  C +CG   C  +    A      N   +
Sbjct: 102 KLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIKCGI--CERFCPTSAITVEKRNSIDI 159

Query: 71  NKCPPGGTATMEKLA--SLMGVEPEPLNAEAQSQVKKVAYIREDECIGCTKCIQACPVDA 128
           N     G    EK+   S + VE E     A++++     +  D CI C  C + CPV A
Sbjct: 160 NLNLCMGCTACEKVCPKSAIKVENEMGEITAENEIS----LNNDTCINCMVCSEICPVGA 215

Query: 129 IIGAGKLMHTVLTADCTGCDLCVEPCPVDCI 159
           I+    LM  +    C  C  C + CPV  I
Sbjct: 216 IVYEDGLM-KLDDKMCIFCGKCEKNCPVTAI 245



 Score = 34.7 bits (78), Expect = 1e-06
 Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 25/91 (27%)

Query: 94  PLNAEAQSQVKKVAYIREDECIGCTKCIQACPVDAI---IGAGKL--------------- 135
           P++A  +  VK  A I  ++C+ C  C + CPV AI    G  KL               
Sbjct: 59  PVDAIKEPSVKSPAEILPEKCVKCEICAKTCPVGAINVLEGRAKLEEDNVVYELKEIDVT 118

Query: 136 -------MHTVLTADCTGCDLCVEPCPVDCI 159
                   H +    C  C +C   CP   I
Sbjct: 119 HRKIRLVKHELDEESCIKCGICERFCPTSAI 149