Pairwise Alignments

Query, 193 a.a., iron-sulfur cluster-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 46.2 bits (108), Expect = 8e-10
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 112 DECIGCTKCIQACPVDAIIGA-----GKLMHTVLTADCTGCDLCVEPCPVDCIDMVPVTQ 166
           ++CI C+ C ++CP DAI         K M       C  C  CVE CP + ++M  + +
Sbjct: 47  EKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLRK 106

Query: 167 NLKNWNWRLNAIPVTLIQE 185
             K   W +  I   LI E
Sbjct: 107 EAKELLWNVPKIINLLIDE 125



 Score = 43.5 bits (101), Expect = 5e-09
 Identities = 34/124 (27%), Positives = 48/124 (38%), Gaps = 26/124 (20%)

Query: 38  DELEAILPQTQCGQCGYPGCRPYAEAIANGDKVNKCPPG----GTATMEKLASLMGVEPE 93
           +E +  +P    G C           I  G+ V  CP      GT   E    L  V P+
Sbjct: 70  EEFKKEMPVFDAGSC-----------INCGNCVESCPTNVLEMGTLRKEAKELLWNV-PK 117

Query: 94  PLNAEAQSQVKKVAYIREDECIGCTKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEP 153
            +N            I E+ C+ C  C  ACPVDAI      ++ +    C  C  C++ 
Sbjct: 118 IINL----------LIDEEVCVSCGTCENACPVDAISHNNTGLYEIDVNLCVSCKNCLKA 167

Query: 154 CPVD 157
           CPV+
Sbjct: 168 CPVE 171



 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 24/140 (17%)

Query: 32  EGNPIVDELEAILPQT--QCGQCG--YPGC-----RPYAEAIANGDKVNKCPPGGTATME 82
           E + ++ E+  I+P     CG C    PG            I +G  +  CP        
Sbjct: 205 EKSDVIAEIPRIVPSLCIGCGNCVDVCPGSIDLERLKVTSCIKSGKCLEVCPT------- 257

Query: 83  KLASLMGVEPEPLNAEAQSQVKKVAYIREDECIGCTKCIQACPVDAIIGAGKLMHT--VL 140
             A  +GV  +     A+  +     + E++CIGC  C ++C V   I   K  +   + 
Sbjct: 258 -TAIRIGVPEKITKRTAECYI-----VDEEKCIGCRICYRSCNVPEAILISKETNLPYIN 311

Query: 141 TADCTGCDLCVEPCPVDCID 160
              C  C LC   CPVD ID
Sbjct: 312 PEYCVRCGLCQNACPVDAID 331



 Score = 31.2 bits (69), Expect = 3e-05
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 109 IREDECIGCTKCIQACPVDAI-IGAGKLMHTVLTADC--------TGCDLCVEPCPVDCI 159
           ++   CI   KC++ CP  AI IG  + + T  TA+C         GC +C   C V   
Sbjct: 240 LKVTSCIKSGKCLEVCPTTAIRIGVPEKI-TKRTAECYIVDEEKCIGCRICYRSCNVPEA 298

Query: 160 DMVPVTQNL 168
            ++    NL
Sbjct: 299 ILISKETNL 307



 Score = 27.3 bits (59), Expect = 4e-04
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 114 CIGCTKCIQACPVDAII 130
           C+ C  C++ACPV+  I
Sbjct: 158 CVSCKNCLKACPVENAI 174



 Score = 26.6 bits (57), Expect = 6e-04
 Identities = 10/22 (45%), Positives = 10/22 (45%)

Query: 140 LTADCTGCDLCVEPCPVDCIDM 161
           L   C  C  C E CP D I M
Sbjct: 45  LPEKCISCSACKESCPSDAISM 66