Pairwise Alignments

Query, 673 a.a., excinuclease ABC, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score = 57.0 bits (136), Expect = 5e-12
 Identities = 69/307 (22%), Positives = 115/307 (37%), Gaps = 39/307 (12%)

Query: 43  GSGKTFTIANVIAKLGRPTIIMAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAY 102
           G+     IA +       T++  P+   A +L  E+++F  +                A 
Sbjct: 26  GASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEV--------------AL 71

Query: 103 VPASNTFIEKDASVNAHIEQMRLSATKALLERKDVVLIASVSAIYGLGDP-DSYLKMLLH 161
            P   T    + S +  I   R+S    L      + I  VS +     P D  L+  L 
Sbjct: 72  FPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLI 131

Query: 162 LRQGDTMGQRDILKRLSELQYTRNDIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDE 221
           +++GD      +  +L    Y   D     G +  RG ++D+FP  S     R++ FDDE
Sbjct: 132 VKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSD-PFRIDFFDDE 190

Query: 222 IERLSEFDPLTGQIVKRIARTTVYPKTHYVTPREKILEATELIKQELRERKQYLLDNNKL 281
           I+ +  FDP   + +  +    + P   + T    I E     +Q    R+         
Sbjct: 191 IDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARR--------- 241

Query: 282 IEAQRIHERVQYDIEMMVELGYCSGIENYSRYLSGRAPGEGPPTLLDYLPADG-LLVIDE 340
            E + ++ +V           + +GIE +          E   TL DYLPA+  LLV+ E
Sbjct: 242 -EPESVYSQVSKGT-------WPAGIEYWQPLFF-----EHSETLFDYLPANSQLLVVGE 288

Query: 341 SHVTVPQ 347
               + Q
Sbjct: 289 LEKAIDQ 295



 Score = 28.5 bits (62), Expect = 0.002
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 30/102 (29%)

Query: 471 GVKVRYLHSDIDTVERV--------------------------EIIRDLRLGKFDVLVGI 504
           G +V +LH+ ++T+++V                          +++ D    +F++LV  
Sbjct: 814 GGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCT 873

Query: 505 NLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRAARN 546
            ++  G+D+P  + + +  AD  G  +    L Q  GR  R+
Sbjct: 874 TIIETGIDVPTANTIIMDRADSLGLAQ----LHQLRGRVGRS 911