Pairwise Alignments

Query, 673 a.a., excinuclease ABC, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 690 a.a., excinuclease ABC, B subunit from Dechlorosoma suillum PS

 Score =  898 bits (2321), Expect = 0.0
 Identities = 456/671 (67%), Positives = 549/671 (81%), Gaps = 8/671 (1%)

Query: 4   SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRPTII 63
           S ++L   F PAGDQP AI  LV+GLE GL+ QTLLGVTGSGKT+T+ANVIA+ GRP +I
Sbjct: 19  SPYRLHQPFPPAGDQPEAIRLLVEGLEDGLSYQTLLGVTGSGKTYTMANVIARTGRPALI 78

Query: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123
           +APNKTLAAQLY E +EF P NAVEYFVSYYDYYQPEAYVP+ + FIEKD+S+N HIEQM
Sbjct: 79  LAPNKTLAAQLYAEFREFLPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIEQM 138

Query: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDTMGQRDILKRLSELQYT 183
           RLSATK+LLER+DVV++A+VS IYG+GD D Y  M+LHLRQGD  GQRDI+KRLSE+QY 
Sbjct: 139 RLSATKSLLERRDVVIVATVSCIYGIGDKDDYHNMILHLRQGDKAGQRDIIKRLSEMQYE 198

Query: 184 RNDIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243
           RN+++ QRGTFRVRG+VIDIFPA+   +AIRV LFDDEIE L  FDPLTG ++ ++ R T
Sbjct: 199 RNEVDFQRGTFRVRGDVIDIFPAEHAEHAIRVCLFDDEIETLQLFDPLTGHLLHKLPRFT 258

Query: 244 VYPKTHYVTPREKILEATELIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303
           +YP +HYVTPR  +L A E IK+ELR+R ++     +L+EAQRI +R ++D+EM+ ELG+
Sbjct: 259 IYPSSHYVTPRATVLRAVEGIKEELRKRLEFFHKEQRLVEAQRIEQRTRFDLEMLNELGF 318

Query: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLVIDESHVTVPQIGAMYKGDRSRKTTLV 363
           C GIENYSR+LSGR PGE PPTLLDYLP D L+ IDESHV + Q+GAMYKGDRSRK  LV
Sbjct: 319 CKGIENYSRHLSGRKPGEAPPTLLDYLPPDALMFIDESHVAIGQVGAMYKGDRSRKENLV 378

Query: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNSYELEKSGGEIVEQVVRPTGLLDPE 423
           +YGFRLPSALDNRPLKFEEFE+LM QTI+VSATP+ YE ++  G++VEQVVRPTGL+DP 
Sbjct: 379 DYGFRLPSALDNRPLKFEEFERLMRQTIFVSATPSDYE-KQHQGQVVEQVVRPTGLIDPV 437

Query: 424 LEVRPVGIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483
           + VRP   QVDDLLSE+ KR+AV+ERVLVTTLTKRM+EDLT+YL E+G+KVRY+HSDIDT
Sbjct: 438 VLVRPAMTQVDDLLSEIRKRIAVSERVLVTTLTKRMAEDLTDYLRENGIKVRYVHSDIDT 497

Query: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543
           VERVEIIRDLRLG+FDVLVGINLLREGLD+PEVSLV ILDADKEGFLRSERSLIQTIGRA
Sbjct: 498 VERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 557

Query: 544 ARNVNGKVILYADRITNSMAKAIGETERRREKQRLYNLEHGIVPKGVVKRITDVMD-VDD 602
           AR++NG  ILYADR+T+SM +A+ ETERRR KQ  +N  HGI PKGV KRI D++D V D
Sbjct: 558 ARHLNGTAILYADRVTDSMRRAMDETERRRAKQMAHNEAHGITPKGVSKRIKDIIDGVYD 617

Query: 603 GREAEKGHGQASLGRVAEPKAKRYHADAAQLSHDIDKLEKQMHEHARNLEFEQAAALRDE 662
              A+K    A    V E  +++       L+ +I +LEKQM E A+NLEFE+AAA RDE
Sbjct: 618 PDAAQKELKAAQQQAVYETMSEK------NLAKEIKRLEKQMLESAKNLEFEKAAAARDE 671

Query: 663 VKRLRELLISA 673
           + RL++    A
Sbjct: 672 LFRLKQQAFGA 682