Pairwise Alignments

Query, 384 a.a., succinyl-diaminopimelate desuccinylase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 415 a.a., M20 family metallo-hydrolase from Methanococcus maripaludis S2

 Score = 70.5 bits (171), Expect = 8e-17
 Identities = 77/329 (23%), Positives = 136/329 (41%), Gaps = 24/329 (7%)

Query: 75  HTDVVPTGDLSRWHTPPFEPTIIDGYLYGRGAADMKGSLAAMVVATERFVAKHPNHPGSI 134
           H D+VP GDL  W++ PF+  I DG +YGRG+ D    + +  +  +    +  +   ++
Sbjct: 88  HMDIVPEGDLGLWNSDPFKAEIKDGIIYGRGSEDNHKGIVSSFLLLKMIFEEKIDPKYNL 147

Query: 135 AFLITSDEEGPFINGTTRVIDTLEARNEKITWALVGEPSSTLKLGDVVKNGRRGSLTANL 194
             +  +DEE     G + +++  E      +  L+  P   +  G+ ++   +  L    
Sbjct: 148 NLIFVADEEDGSKYGLSYLVNNFEDEIFS-SKDLIIVPDFGMPEGEFIEIAEKNILWLKF 206

Query: 195 TVKGVQGHVAYPHLADNPIHKAAPF---LAELSQTHWDNGNAFFPP--TSMQIANINGGT 249
            + G Q H + P    N    A  F   L +     +D  N  F P  ++ +   +    
Sbjct: 207 KITGKQCHGSVPENGINADLIAFSFGKGLYDKLYGKYDGINPIFNPAFSTFEPTILKNNI 266

Query: 250 GASNVIPGALEVMFNFRY-----STEVTAEI--LIERVETLLTAHELDYD------IRWT 296
              N IPG +E+ F+ R        EV ++I   IE  +  +  H L +D      I  T
Sbjct: 267 ENINTIPGYVELNFDCRIIPKYDPKEVLSDIENYIEVFKNEIEKHILHFDISEKENISIT 326

Query: 297 FNGLPFLTGEGPLLDA-----TRHAIRQVTGYDTDPQTTGGTSDGRFIAPTGAKVLELGP 351
           +  L     E    D+        AI+ V   ++     GG +   F+   G      G 
Sbjct: 327 YEILKLEKAEETKKDSEVVKKLGSAIKNVLNKESVLCGMGGGTVAAFLREKGYNTAVWGI 386

Query: 352 VNATIHKVNECVKVDDLEQLALCYEVILE 380
            + T H+ NE +K+++L ++A  Y  IL+
Sbjct: 387 GDETAHQPNEHIKIENLIKMAEVYLDILK 415