Pairwise Alignments

Query, 891 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 966 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  294 bits (752), Expect = 2e-83
 Identities = 276/982 (28%), Positives = 419/982 (42%), Gaps = 138/982 (14%)

Query: 6   TVARAVRFSLLALVSTSIAPIAMAAEQGAVDANKVERIAVTGSRIQRTDMETSSPVTVIS 65
           +VA A+  ++ A +     P A  A Q       ++ + VTGSR++R D ET++PV  +S
Sbjct: 27  SVAAALGLTVGADLHAQQTPAAGDATQ------TLDSVVVTGSRLRRVDTETANPVVTVS 80

Query: 66  RAEIDASGTATVSDFVRNLSQNSFGSFREASGFGSGQSSQSTVSMRGLGSQRTLVLIDGR 125
           + +I A+G ATV D ++ L   +  +    +  G G  + S VS+RGLG +RTLVL++G 
Sbjct: 81  QEQIAATGKATVGDLLQELPSIAGNATNPYTNNGGGTGA-SAVSLRGLGDKRTLVLVNGI 139

Query: 126 RMGSSVAFGGGTQNLNVVPMAAIERIEVLRDGASAVYGSDAVAGVINIITKKEFEGVEFD 185
           R+  +        ++N +P + IERIEVL DGASAVYGSDA+ GV+N I +  F+GV+F 
Sbjct: 140 RLAYN--------DVNAIPASMIERIEVLSDGASAVYGSDAIGGVVNFILRTRFDGVQFS 191

Query: 186 ADLGATQHGGAEKSNARFTFGVNSEKTNMVASVEYYNRAALYDADRDYS-DTLYSAHGWP 244
           +D G ++     + N   T G   E+ +++A + Y+N   +  A RDYS D L    G P
Sbjct: 192 SDFGTSKERDGNRRNFALTAGKTFERGSLIAGLSYHNIDPVSAAARDYSKDALALTDGVP 251

Query: 245 -GTGSYVDKTKPILDADGKPTGKY--QTVSFADKRCGEGNSLVTGPDGNQTCSYNAAAES 301
              GS    T  +   DG        Q           G S   GP G+  C Y+AAA+S
Sbjct: 252 VKQGSSATPTGTVNFNDGSDASSQLRQANGCTRVTLNGGVSGRAGP-GDFHC-YDAAADS 309

Query: 302 -------ATMAAQERFSTFVKVDHELTEDINWTNRLMMSRVWTEGQYAAAPNSYSPKLRW 354
                       Q+R + FV   +  ++ +        S+  +    A  P         
Sbjct: 310 YNYQPFNLLQTPQKRTNAFVLGTYRFSDSVEGYVNTWFSKTESASIIAPIP--------- 360

Query: 355 TKENSDIYLATVNKYGNDYLKNQLKYDAKGNLIGGDTINLKMRTTPLGPRVTNVEDTDIN 414
              N D  L +   Y N +  N     + G        +   R T LG R       +  
Sbjct: 361 IFSNGDNILVSSQSYYNPFGVNFGTDRSSGTSYN----DFNTRATVLGNRSYQYNTYNFQ 416

Query: 415 FLTALEGHSDILGGTAWNLGAQWIRSDV--TTIQTGLA-----NANMIQEFLD-NGKLDY 466
               L G     G ++W   A +    V   +I  G       N  +   FLD +G +  
Sbjct: 417 ISPGLRGR---FGDSSWQWDATFNYGKVKQKSINNGFLDYATFNQAIGPSFLDSDGVVKC 473

Query: 467 FAAGTGYV-----------EGSNELQLQEAAHTGIFTGRVQTYGIDGGASFDLFELPAGT 515
            +AG               + SN   LQ      I T        +  A+  LF++PAG 
Sbjct: 474 GSAGAAIAGCTPLNFFNLNDSSNLATLQGMVVNPIVTSVYTVKQFEANANGTLFDMPAGA 533

Query: 516 VPLAIGFEFMRTEYDKTNDAGSNLGNIIGTSGGDNIQG----------KSREVLSFSAET 565
             LA G  + +     T+D        + T   D + G           S +V    AE 
Sbjct: 534 ASLAAGLSYRKERSTTTSDP-------LWTGDEDGLCGVIEYCASTLSGSFDVKEAYAEA 586

Query: 566 MFPI------IDGLDLELSARFDDYSDFGSTFNPKVGLSYRPVDSLLVRASYGTGFRAPT 619
           +FP+      I+ L++ L  RF DYS  GS  N KV L YRP+++LL+R +    FRAP 
Sbjct: 587 LFPLLKDLPGINALNITLGTRFSDYSSVGSKTNSKVSLEYRPIENLLLRGTVSQVFRAPN 646

Query: 620 FDDLYATASETYLWARDWTQCPGNPNG----CVQEQFKAQYQGND--------------- 660
            ++LYA  +       D   C G   G    C        YQ +D               
Sbjct: 647 INELYAGVAGDAATVND--PCNGYTGGSSVACANVPTDGSYQQSDGQVSGKVSGAAVAGY 704

Query: 661 DLEPEESTSLSLGLVWNV--TDALDFELSYYDIQIDNVISTMSTQDVLNQ-ERDGFDMSN 717
            L+PE   S  +GLV++    D L     ++ I +++ I+T+S Q VLNQ   +      
Sbjct: 705 QLKPETGKSYDVGLVYDPQWIDGLSLSADWWRIDLEDTITTVSAQTVLNQCYANSASAFC 764

Query: 718 VLFRDPVTGKIDYVVLQKMNLGELKTSGIDFNIRYLL-ETSVGEFRFGAETNYVLSWESK 776
            L      G I+Y+    +NLG+L   GIDFN+ Y L ET+ G    G    Y+  ++  
Sbjct: 765 PLIHRNGNGTINYIAEPTVNLGKLWAKGIDFNLTYRLPETAWGNVNVGLNGTYLTRYDVL 824

Query: 777 DGPYSELEDIIGDVGQ--------PQFRANLSTTWTQGEWEASLFARYT------DSQED 822
                     I +VG+        P++R   + +W  G+W A+   RY       +S  D
Sbjct: 825 PDTTDPSSVTIHNVGRYTQAYGNFPRWRGLGTVSWALGDWSATWRIRYVGNTAIGNSDPD 884

Query: 823 EDYGKTPSQWLL----------DAQAGYNL-PWNAKVNVGIRNLLDEEPAM--NENLGFP 869
           +      SQ  +          + Q GY + PW+ +  VG+ N+ D++P +  + N+G  
Sbjct: 885 QSLSADSSQPTVVRKIGAYVYNNLQLGYEVQPWHTRFEVGVDNIADKQPPLYYSNNVGNA 944

Query: 870 GYDTYLYDPIGREYYVRYNQKF 891
             D   YD +GR Y+ R   KF
Sbjct: 945 NTDVATYDLLGRFYWARATVKF 966