Pairwise Alignments

Query, 891 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 945 a.a., TonB-dependent receptor 2 ass w/ COG3533 from Xanthomonas campestris pv. campestris strain 8004

 Score =  232 bits (591), Expect = 9e-65
 Identities = 224/875 (25%), Positives = 383/875 (43%), Gaps = 117/875 (13%)

Query: 11  VRFSLLALVSTSIAPIAMAAEQGA------VDANKVERIAVTGSRIQRTDMETSSPVTVI 64
           +R ++L +++ +  P A A +QG+        A  +E++ VTG+ ++R D ET+SPV VI
Sbjct: 26  LRRAILLVLAAAALPAA-AQQQGSDASASPETAQTLEQVNVTGTHLRRVDAETASPVVVI 84

Query: 65  SRAEIDASGTATVSDFVRNLSQNSFGSFREASGFGSGQS-SQSTVSMRGLGSQRTLVLID 123
            R  I+ SG +T+   ++ L       F       SG S  ++ VS+R LG +RTLVL++
Sbjct: 85  DRQRIEDSGKSTLGQLLQQLPV--MAGFMAGPALNSGFSHGRALVSLRNLGPERTLVLVN 142

Query: 124 GRRMG---SSVAFGGGTQNLNVVPMAAIERIEVLRDGASAVYGSDAVAGVINIITKKEFE 180
           G RM    SSVA   G  ++N +P A +ER+EVL DGAS+VYGSDA+ GV+NII K +++
Sbjct: 143 GHRMAGPASSVASAPGV-DVNAIPAAMVERVEVLTDGASSVYGSDAIGGVVNIILKDKYD 201

Query: 181 GVEFDADLGATQHGGAEKSNARFTFGVNSEKTNMVASVEYYNRAALYDADRDYS------ 234
           G     D   + HG A        +G + ++  ++  +   +   +++ DR Y+      
Sbjct: 202 GFAATVDYAQSTHGDANSRTLGVEWGKSWDRGGVIVGLSRNSMNPVFNRDRSYAAKAVEY 261

Query: 235 -DTLYSAHGWPGTGSYVDKTKPILDADGKPTGKYQTVSFADKRCGEGNSLVTGPDGNQTC 293
            +   S      T +++   + +  A+G   G     +F              P    T 
Sbjct: 262 FEGQVSEVRGANTRAFLTDGRRLTPAEGVAPGPVGQDAFR-------------PYQRATD 308

Query: 294 SYNAAAESATMAAQERFSTFVKVDHELTEDINWTNRLMMSRVWTEGQYAAAPNSYSPKLR 353
           SYN       +   ER +  +    + T  I       M   WT  +  +  +++  ++ 
Sbjct: 309 SYNVYDAQYLITPIERTNASLHGSFDFTPSIQG----YMDVFWTRSKTTSRLDAFGLEML 364

Query: 354 WTKENSDIYLATVNKYGNDYLKNQLKYDAKGNLIGGDTINLKMRTTPLGPRVTNVEDTDI 413
              +N        N +G D L+   +YD              +R+T    RV        
Sbjct: 365 GASDNY------YNPFG-DLLE---RYD--------------LRSTQANTRVYTATMFQT 400

Query: 414 NFLTALEGHSDILGGTAW--NLGAQWIRSDVTTIQTGLANANMIQE-----FLDNGKLDY 466
           N +  L G    + GT+W  +  A + R   T ++TG +  + +       FLD+  +  
Sbjct: 401 NIVAGLRGR---VQGTSWQWDAAAGYARYKDTLVRTGFSITSALNNAVGASFLDSDGVVK 457

Query: 467 FAAGTGYVEGSNELQL---QEAAHTGIFTGRVQTYG---------IDGGASFDLFELPAG 514
             A    + G   + +    + A      G  +            +D  A+ DLF +PAG
Sbjct: 458 CGAPGAVIAGCTPINIFNPNDPATIAALRGTQRPVDLIDESEMRFVDISANGDLFAMPAG 517

Query: 515 TVPLAIGFEFMRTEYDK--TND--AGSNLGNIIGTSGGDNIQGKSREVLSFSAETMFPII 570
            V  A+G  +   ++ +  T+D  A    GN     G    QG+   V    AE + P++
Sbjct: 518 AVQAAVGLVYRTNKFAQGTTSDVAAADADGNCDYNDGCILQQGRDESVREAYAELLVPLL 577

Query: 571 DG------LDLELSARFDDYSDFGSTFNPKVGLSYRPVDSLLVRASYGTGFRAPTFDDLY 624
            G      L+L L +R+  Y  +G+T N KV + +RPV +LLVRA+    FRAP   DLY
Sbjct: 578 KGAPFADTLNLNLGSRYSKYDAWGATTNSKVAIEWRPVANLLVRATGSQVFRAPALGDLY 637

Query: 625 AT--------------ASETYLWARD--WTQCPGNPNGCVQEQFKAQYQGNDD----LEP 664
            +                E Y  A +   T  P + +     +F     G ++    L+P
Sbjct: 638 GSPFTAVIDNTGDFQDPCEGYTGAPNPACTNVPNDGSFTNTARFNVVTSGANNIGFQLKP 697

Query: 665 EESTSLSLGLVWNVTDALDFELSYYDIQIDNVISTMSTQDVLNQERDGFDMSNV-LFRDP 723
           E   S +LG+V++    L   +  + + +D+++S +  Q V++   +G + +   L +  
Sbjct: 698 ERGRSYNLGVVYDPLQNLSVNVDSWRVVLDDMLSGVGDQQVVSDCFEGREAAFCGLIQRD 757

Query: 724 VTGKIDYVVLQ-KMNLGELKTSGIDFNIRY-LLETSVGEFRFGAETNYVLSWESKDGPYS 781
             G++  V +    N G++   G D  I Y L +T+ G+F  G +  Y  S+      ++
Sbjct: 758 ANGQLTRVAVPFAYNSGKVDIRGYDAGIHYRLADTAWGDFSTGLDATYFSSFRFAGETHN 817

Query: 782 ELEDIIGDVGQPQFRANLSTTWTQGEWEASLFARY 816
            + +       P++RA  +  W +G W AS   RY
Sbjct: 818 YVGENSSWGNMPRWRAVANLAWDKGPWHASWNTRY 852