Pairwise Alignments

Query, 891 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1021 a.a., Outer membrane cobalamin receptor protein from Sphingomonas koreensis DSMZ 15582

 Score =  216 bits (549), Expect = 7e-60
 Identities = 248/1025 (24%), Positives = 413/1025 (40%), Gaps = 165/1025 (16%)

Query: 14   SLLALVSTSIAPIAMAAEQGAVDANKVERIAVTGSRIQRTDMETSSPVTVISRAEIDASG 73
            +L+AL   + A  A  A+  A +A   E + V G++I+  D+ T+ PV+V+ R +IDA+G
Sbjct: 15   ALIALALPAYAQQASQADTAAEEAPPAE-VVVVGTQIKGKDITTALPVSVVDRNQIDATG 73

Query: 74   TATVSDFVRNLSQNSFGSFREASGFGSGQSSQ---STVSMRGLGSQRTLVLIDGRRMGSS 130
              +  D +R++ Q    +F EA+   +  +++   +++++R LG   TL L++GRR+ + 
Sbjct: 74   ALSGDDLIRSIPQAGDVTFNEANNPQTSNAARGDVNSINLRNLGVGNTLTLLNGRRLVNH 133

Query: 131  VAFGGGTQNL-------NVVPMAAIERIEVLRDGASAVYGSDAVAGVINIITKKEFEGVE 183
                 G  N+       N +P+A +ER+E+LRDGASA+YGSDAVAGV+N +T+ +++G E
Sbjct: 134  PTSQAGDGNVPVLGYNSNALPVAGLERLEILRDGASAIYGSDAVAGVVNTVTRGDYDGAE 193

Query: 184  FDADLGATQ--HGGAEKSNARFTFGVNSEKTNMVASVEYYNRAALYDADRDYSDTLYSAH 241
             +   G  +  H    +  A      +  + N      Y  R A    D+ Y+ T     
Sbjct: 194  LNFRYGFAEGTHRKEFEGTAMVGHNFDEGRGNFSLFFNYVRRTAQLAEDQPYTATDNLLS 253

Query: 242  GWPGTGSYVDKTKPILDADGKPT-GKYQTVSFADK----RCGEGNSLVTGPDG------- 289
             +    +Y       L ADG+ T   +  ++        R   GN  +T   G       
Sbjct: 254  YFADDPAYAGN----LAADGRATQSPWANLAVVGGPGTIRRSPGNQALTSSAGAFHTQSA 309

Query: 290  ----------NQTCSYNAAAESATMAAQERFSTFVKVDHELTEDINWTNRLMMSR----- 334
                      +  C  +    +A+    ERF T  +    +T   N  N     R     
Sbjct: 310  LNPGCLVTINSNVCYGSGTRATASTLRSERFDT--RPGTTVTPSFNRYNAFFTGRYELSD 367

Query: 335  ---VWTE-GQYAAAPNSYSPKLRWTKENSDIYLATVNKYGNDYLKNQL-KYDAKGNLIGG 389
               ++TE G Y A      P       N +  +   + Y N +         A  N I G
Sbjct: 368  AVELYTELGYYLADTQRIQP----PTINLNAIVIPASNYWNPFGPTTFANGQANPNRIPG 423

Query: 390  DT--------INLK-MRTTPLGPRVTNVEDTDINFLTALEGHSDILG-GTAWNLGAQWIR 439
             T        + L   R    G +V NVE+    FL    G        TA        R
Sbjct: 424  LTNVPAAGLPVRLSTYRFVDAGNQVVNVENWQSRFLLGARGKIGTFDYDTAVLYSEAQSR 483

Query: 440  SDVTTIQTGLANANMIQEFLDNGKLDYFAAGTGYVEGSNELQLQEAAHTGIFT----GRV 495
                 I   L   N+     D    + F+ G        +      A    F+     + 
Sbjct: 484  DSSNAIDMTLLQRNLALSTPD--AYNPFSGGCSATPSLGDCSPASQATIDSFSFNLVRKS 541

Query: 496  QTYGIDGG---ASFDLFELPAGTVPLAIGFEFMRTEYDKTND--------------AGSN 538
            +T  + G    ++ +LF+LPAG + +A+G E  R       D                +N
Sbjct: 542  KTSLLLGDFKLSNANLFDLPAGGLGIALGIEGRRETQQDIRDPRLNGTITFTDMVTGETN 601

Query: 539  LGNIIGTSGGDNIQGKSREVLS---------FSAETMFPIIDGLDLELSARFDDYSDFGS 589
            L N+   S   +++G SR V S          S E   P+I  LDL+L+ RF++YSDFGS
Sbjct: 602  LSNVAAVSPTPSVRG-SRTVFSAFAELAVPVVSPEMNIPLIHRLDLQLAGRFEEYSDFGS 660

Query: 590  TFNPKVGLSYRPVDSLLVRASYGTGFRAPTFDDLYATASETYLWARDWTQCP-------- 641
               PK+  ++  +D + +R S+  GFRAP  +     A        D+ +C         
Sbjct: 661  VAKPKIAAAWDIIDGVRLRGSWSQGFRAPNLEQTKTVAYSRLNSNTDYFRCEADLRAGRI 720

Query: 642  GNPNGCVQE-QFKAQYQGNDDLEPEESTSLSLGLVW------NVTDALDFELSYYDIQID 694
             N + C +   +     GN DL+PEEST+ ++G V       +    L     ++ IQ  
Sbjct: 721  ANYSACSRGISYSIFISGNPDLKPEESTNWTVGTVIEPKFIPSEYGRLTLTADFWSIQQT 780

Query: 695  NVISTMSTQDVLNQE----RDGFDMSNVLFRDP--------------VTGKIDYVVLQKM 736
             ++     Q+ L  +      G    NV+   P                G +  +  Q +
Sbjct: 781  GIVGQFGAQNALVLDYLLRLQGSSNPNVIRSAPSADDTPVFAGTNLTPAGAVTRINDQFV 840

Query: 737  NLGELKTSGIDFNIRYLLETSVGEF----------RFGAETNYVLS--WESKDG------ 778
            NL      GID  + Y + T +G F          +F  +T   +   +++++       
Sbjct: 841  NLLPQTVQGIDLALLYNVRTGIGRFDVAINAARLTKFSRDTPPAVQALFDARNAGQINAA 900

Query: 779  -PYSELEDIIGDVGQPQFRANLSTTWTQGEWEASLFARYTDSQEDEDY-GKTPSQWLLDA 836
             P ++  D++ + G+P++R   S TW+   ++   F  Y     D ++     + + L+ 
Sbjct: 901  TPLTDATDLLEERGKPKWRLTGSLTWSHKGFQIGAFGNYIGKVYDTNFLDAQGNPYPLEG 960

Query: 837  QAGYNLPWNAKV----------NVGIRNLLDEEPAMNENLGFPGYDTYLYDPIGREYYVR 886
            +A +NL    +V           +G RN+ D +P +  +    GY   LY P GR  Y  
Sbjct: 961  KAFFNLYAQYRVRKGPLEDTRFRIGARNIFDTQPPITAD----GYLGSLYVPYGRYIYAS 1016

Query: 887  YNQKF 891
              +KF
Sbjct: 1017 IGKKF 1021