Pairwise Alignments

Query, 217 a.a., channel protein, hemolysin III family subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 215 a.a., channel protein, hemolysin III family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  119 bits (299), Expect = 3e-32
 Identities = 65/202 (32%), Positives = 109/202 (53%), Gaps = 10/202 (4%)

Query: 20  NSISHGLGVIAGAVGLIFMLLKGVDHLSSIQLTGVIIYGASLILLFLSSTLYH--SVTHR 77
           + ++H +G +   +G + +L++    L    +    ++G S++LL+ +STLYH   +  R
Sbjct: 10  SGLTHCIGALLAVLGTVLLLVRAASPLLPWHVVTFSVFGVSMVLLYTASTLYHWLPLPER 69

Query: 78  GWKHKLKIVDHCAIYCLIAGTYTPLMLISLQGNLSTIILTAIWSLAIGGILFKTLFIHRF 137
           G +  ++ VDH  I+  IA TYTP+ LI L+G     +   +W++A+ GI  K  ++H  
Sbjct: 70  GVR-LMRRVDHSMIFVYIAATYTPICLIPLRGPWGWSLFGCVWAVAVAGIFTKVFWLHAP 128

Query: 138 KKLSLVLYLAMGWLCMTVIGDLTAAMSPLGFNLLLLGGLFYTLGVIFYVGKRIPYN---- 193
           + +S  +YL MGW+ +  I  L   +       L+ GG FY+ G + Y  KR P      
Sbjct: 129 RWVSTGIYLGMGWMALAGIYPLVMNLQAGALAWLVAGGAFYSAGAVIYALKR-PNRFRHF 187

Query: 194 --HAIWHLFVLAGAMSHFFCIY 213
             H I+HLFV+AG+  HF  +Y
Sbjct: 188 GFHEIFHLFVMAGSFCHFVVMY 209