Pairwise Alignments

Query, 217 a.a., channel protein, hemolysin III family subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 221 a.a., Hly-III family protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  111 bits (277), Expect = 1e-29
 Identities = 72/208 (34%), Positives = 116/208 (55%), Gaps = 6/208 (2%)

Query: 12  YSLSEEIANSISHGLGVIAGAVGLIFML--LKGVDHLSSIQLTGVIIYGASLILLFLSST 69
           YS +E ++++  H LG +  A+  + +L  L  V  L +  +TG+ +YG SLI++ L S 
Sbjct: 11  YSRAEVLSDAAVH-LGALGAALAAVPVLITLGAVWQLGAGPVTGLAVYGGSLIVMLLCSY 69

Query: 70  LYHSVTHRGWKHKLKIVDHCAIYCLIAGTYTPLMLISLQGNLSTIILTAIWSLAIGGILF 129
           LY+ V       +L+ +D  AI+  IAGTYTP  LIS  G     +LTAIWS A  G++ 
Sbjct: 70  LYNHVRCSDCVMRLRTLDQSAIFVKIAGTYTPFALISGTG---FGLLTAIWSGAALGVVL 126

Query: 130 KTLFIHRFKKLSLVLYLAMGWLCMTVIGDLTAAMSPLGFNLLLLGGLFYTLGVIFYVGKR 189
             L          +L L +GW  +     L A +S     L+ +GG+ Y++GV F + KR
Sbjct: 127 AALRGRGSVLPCALLCLGLGWAIVVGGQTLLATLSMPVIVLMAVGGVLYSVGVPFLLAKR 186

Query: 190 IPYNHAIWHLFVLAGAMSHFFCIYLTVI 217
           +PY++ IWH FV+  ++ +F  I++ ++
Sbjct: 187 MPYHNTIWHGFVVVASVLYFIAIFVHMV 214