Pairwise Alignments

Query, 217 a.a., channel protein, hemolysin III family subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 229 a.a., hemolysin III (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  108 bits (271), Expect = 6e-29
 Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 12/221 (5%)

Query: 3   QEKPLNISAYSLSEEIANSISHGLGVIAGAVGLIFMLLK---GVDHLSSIQLTGVIIYGA 59
           +++ L    Y+  EE AN++SHG G++ G +   F+L K   G +   ++    V ++G 
Sbjct: 10  RKETLENKRYNNVEEWANTLSHGAGILLGVIAGYFLLAKAAAGAEPKWAVACVTVYLFG- 68

Query: 60  SLILLFLSSTLYHSVTHRGWKHKLKIVDHCAIYCLIAGTYTPLMLISLQ--GNLSTIILT 117
            ++  ++SST YH       K  L+  DH AIY  IAGTYTP  L+ ++  G     I +
Sbjct: 69  -MLSSYVSSTWYHGSRPGKLKELLRKFDHGAIYLHIAGTYTPFTLLVMRHAGGWGWGIFS 127

Query: 118 AIWSLAIGGILFKTLFIHRFKKLSLVLYLAMGWLCMTVIGDLTAAMSPLG----FNLLLL 173
            +W  AI G +     +     L    Y+AMG   +  +  L   ++ +G    F  L+ 
Sbjct: 128 FVWLSAIVGFILSFKKLKEHSNLETACYIAMGACILVAMKPLMDHLAEMGAGPAFWWLIG 187

Query: 174 GGLFYTLGVIFYVGKRIPYNHAIWHLFVLAGAMSHFFCIYL 214
           GG+ Y +G +FY   R PY HA +HLF L G++ H   I+L
Sbjct: 188 GGVSYIIGAVFY-SLRKPYMHATFHLFCLGGSIGHIIAIWL 227