Pairwise Alignments

Query, 334 a.a., Holliday junction DNA helicase RuvB (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 352 a.a., Holliday junction branch migration DNA helicase RuvB from Pseudomonas fluorescens SBW25-INTG

 Score =  472 bits (1214), Expect = e-138
 Identities = 241/334 (72%), Positives = 284/334 (85%), Gaps = 1/334 (0%)

Query: 1   MIEADRLIQPQ-LQGQDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHML 59
           MIEADRLI     + +++V DRA+RP  L +Y GQ   R Q+++FIQAA+ R E+LDH L
Sbjct: 1   MIEADRLIAATGPRDREEVQDRAIRPLSLADYIGQPTVREQMELFIQAARGRSESLDHTL 60

Query: 60  IYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRLS 119
           I+GPPGLGKTTLA I+A EMGV+IKSTSGPVLE+ GDLAALLTNLE  DVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLS 120

Query: 120 PVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPL 179
           P+VEE+LYPAMED+QLDIMIGEGPAARSIKLDLPPFTLVGATTRAG LT+PLR RFGI  
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 180 RLEFYNVKDLSTIVTRSAQVMGLAIDSEGATEIAKRSRGTPRIANRLLRRVRDYAEVQHD 239
           RLEFY+  DL+TIV+RSA ++GL +D EGA EIA+R+RGTPRIANRLLRRVRD+AEV+  
Sbjct: 181 RLEFYSTADLATIVSRSAGILGLPLDPEGAFEIARRARGTPRIANRLLRRVRDFAEVRAK 240

Query: 240 GAVTQNVAELALNLLDVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIED 299
           G +T+ VA+LALNLLDVD  GFD+ DR+LLL +I+KF GGPVG+D+LAAAI EER TIED
Sbjct: 241 GHITKAVADLALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 300 VLEPFLIQQGFIQRTPRGRIATARAYVHFGMIKP 333
           VLEP+LIQQG+I RTPRGR+ T  AY+HFG+  P
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIP 334