Pairwise Alignments

Query, 306 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 327 a.a., LysR family transcriptional regulator from Pseudomonas fluorescens FW300-N2E3

 Score =  100 bits (250), Expect = 4e-26
 Identities = 82/293 (27%), Positives = 132/293 (45%), Gaps = 8/293 (2%)

Query: 6   LSRISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRDSLNDELFYRNGNSLVA 65
           +S   +  L+TL V+L   SV  +A+RL LSPS++S+ L++LR++  D L  R G  LV 
Sbjct: 1   MSTPDLNLLVTLDVLLAEGSVARAAKRLRLSPSAMSRALARLRETTGDPLLVRAGRGLVP 60

Query: 66  TPLAKRLGPSVQQMINDMNQIM-SQDAFTPTNYEGHFSLAMRESTFELLAAKLSAHILSL 124
           TP A  L   V Q++ D   ++   +A         F+L   E   E   A+L A +   
Sbjct: 61  TPRALELREQVSQLVQDAETVLRPAEALNLQRLVRTFTLRTSEGFVESFGAQLIARVSEQ 120

Query: 125 APHIHLDIYSKDNIGFDGLINGSLDFVLLPHDLSQPNPSQDDLVWETLFSDEMICLMNSS 184
           AP + L    K +     L +GS+D        S+      ++  + LF D  I ++   
Sbjct: 121 APGVRLRFVQKPDKDSTSLRDGSVDLETGVVGKSE----GPEVRTQALFRDRFIGVVRKG 176

Query: 185 HPLAKQSHISFDDYLSYSHIGITDTDLSTPYFDILLAQQSKKRAVPISVPDFGSAALMCH 244
           HPL+ Q  I+   Y +  HI ++   L     D  L      R V   V  F +A  +  
Sbjct: 177 HPLS-QGEITPARYAAGKHIYVSRRGLDKGPIDEALKSLELAREVVTIVDGFSTAVSLAR 235

Query: 245 HSELLFTCSRRWASIASQAKGLTVKSLPIEYGKVAYSLVWHKQSMKDPALRWL 297
            S+++ +  +R     +   G+   +LP+       S++WH +   D A RWL
Sbjct: 236 ASDMIASVPQRHTE--NLRAGMHSFALPLSLPTFTVSMLWHPRLDADLAHRWL 286