Pairwise Alignments

Query, 306 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 309 a.a., LysR family transcriptional regulator from Pseudomonas fluorescens FW300-N2E3

 Score =  107 bits (268), Expect = 3e-28
 Identities = 74/305 (24%), Positives = 142/305 (46%), Gaps = 13/305 (4%)

Query: 6   LSRISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRDSLNDELFYRNGNSLVA 65
           LS++ +   I    +    ++T + + + ++  +VS  L++LR++ ND LF R    +V 
Sbjct: 3   LSKVDLNLFIVFDAIYTEANLTRAGQIVGITQPAVSNALARLRETFNDPLFVRTAQGMVP 62

Query: 66  TPLAKRLGPSVQQMINDMN-QIMSQDAFTPTNYEGHFSLAMRESTFELLAAKLSAHILSL 124
           TP+A+ +   V+  ++ +   +     F P      + ++M + T  ++   L   +  L
Sbjct: 63  TPMAQNIIGPVRNALSLLRVSVQESRIFNPLQAVKTYRISMTDLTEAVILPPLFQRLRRL 122

Query: 125 APHIHLDIY-SKDNIGFDGLINGSLDFVLLPHDLSQPNPSQDDLVWETLFSDEMICLMNS 183
           AP + ++ + SK       L  G LDF +       P  +   +    L  D  +C M  
Sbjct: 123 APTVIIESFLSKRRETTKELAAGRLDFAV-----DAPLNTDPQVRHVKLMEDRYVCAMRK 177

Query: 184 SHPLAKQSHISFDDYLSYSHIGITDTDLSTPYFDILLAQQSKKRAVPISVPDFGSAALMC 243
            HP+A +   S DDYLS +H+ I+       Y D+ L +   +R + +    +  A+ + 
Sbjct: 178 GHPMASKEKFSLDDYLSLTHVHISSRRSGLGYVDLALGKMGIQRKIALRSQHYLMASQVL 237

Query: 244 HHSELLFTCSRRWASIASQAKGLTVKSLPI-EYGKVAYSLVWHKQSMKDPALRWLYEQIL 302
             ++++ T   R+A    +   L    LP+ +   V   L WH+ + +DPA RW+ EQ++
Sbjct: 238 QQTDMVMTVPERFA----RRHDLHAFYLPVNDVPPVETHLYWHESTDQDPANRWMREQMI 293

Query: 303 -LCSR 306
            LC +
Sbjct: 294 ELCQQ 298