Pairwise Alignments

Query, 306 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 330 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  173 bits (438), Expect = 6e-48
 Identities = 105/317 (33%), Positives = 163/317 (51%), Gaps = 16/317 (5%)

Query: 1   MDLAKLSRISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRDSLNDELFYRNG 60
           M+L  L+RI +  L+ L V+L+  SVT +A RL LS S++SK+L++LRD+L D LF R  
Sbjct: 1   MNLDNLARIDLNLLVMLQVLLEERSVTRAASRLHLSQSALSKSLNRLRDTLGDPLFIRTA 60

Query: 61  NSLVATPLAKRLGPSVQQMINDMNQIMSQDAFTPTNYEGHFSLAMRESTFELLAAKLSAH 120
           + L  T  A  LG  +  M+  + Q+    +F P +    FS AM ES +E L       
Sbjct: 61  HGLKPTAHAALLGQQLPDMLQGLYQLTQPPSFNPASSRRQFSFAMVESAYETLIPYFIGP 120

Query: 121 ILSLAPHIHLDIYSKDNIGFDGLINGSLDFVLLPHDLSQPNPSQD--------DLVWETL 172
           +L+ AP++ LD Y         L  G +DF +   D+   NP  D         +  +TL
Sbjct: 121 LLNNAPNLRLDSYLWTEKSLSSLQKGQIDFGITGRDI---NPQSDLIIDRLPEGIAHQTL 177

Query: 173 FSDEMICLMNSSHPL---AKQSHISFDDYLSYSHIGITDTDLSTPYFDILLAQQSKKRAV 229
           F+D  +CL+   HP+    +      D YL  SH+ +          D  LA+  ++R +
Sbjct: 178 FTDHQVCLVRQGHPMLPAIRNHQWDLDIYLEMSHVQVRCEGNEWWALDYFLAKSGQRRHL 237

Query: 230 PISVPDFGSAALMCHHSELLFTCSRRWASIASQAKGLTVKSLPIEYGKVAYSLVWHKQSM 289
             +VPDF  AA +C HS+L+FT    +A+ A +   L    LP ++  +AY L+WH+++ 
Sbjct: 238 STTVPDFYGAASVCAHSDLIFTLPSSFAAHARKLYALEELPLPFDFHSLAYVLLWHERND 297

Query: 290 KDPALRWLYEQILLCSR 306
            +P  +W+ E I  C R
Sbjct: 298 DEPGHKWIRETI--CKR 312