Pairwise Alignments

Query, 306 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 311 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  107 bits (267), Expect = 4e-28
 Identities = 79/298 (26%), Positives = 148/298 (49%), Gaps = 9/298 (3%)

Query: 6   LSRISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRDSLNDELFYRNGNSLVA 65
           L  + +  L   H +    SVT +A+++ LS S+ S  LS+LR  L+D LF R+ ++++ 
Sbjct: 15  LYHVDLNLLKLFHSLYCCRSVTQAAQQMHLSQSAFSHALSRLRQQLDDPLFIRSASAMLP 74

Query: 66  TPLAKRLGPSVQQMINDMNQ-IMSQDAFTPTNYEGHFSLAMRESTFELLAAKLSAHILSL 124
           TP A  +   V Q+++ ++  ++ + AF+P   +  F +A+ + T  +L ++L+  + +L
Sbjct: 75  TPYADSISVEVGQVLDRLSDCLLPKQAFSPVQSQHAFRIAVTDFTALMLMSRLAKRLSTL 134

Query: 125 APHIHLD-IYSKDNIGFDGLINGSLDFVLLPHDLSQPNPSQDDLVWETLFSDEMICLMNS 183
           AP + L+ I+ +  +      +G LDF L   D S        L+ E+L+ +   C + S
Sbjct: 135 APKVRLNLIHDEQRMPLSRFESGQLDFAL---DFSHDEGQGHRLISESLWWEGDYCTLAS 191

Query: 184 SHPLAKQSHISFDDYLSYSHIGITDTDLSTPYFDILLAQQSKKRAVPISVPDFGSAALMC 243
           S    K + ++ D +L+  HI ++     T   D +LA Q   R + I +P+  +A  + 
Sbjct: 192 S----KVTKMNRDIFLASRHILVSPWGTDTGIVDQVLASQGLSRDIAIQLPNVINAPFLV 247

Query: 244 HHSELLFTCSRRWASIASQAKGLTVKSLPIEYGKVAYSLVWHKQSMKDPALRWLYEQI 301
             S  L T  R+ A + + +  L    +P+       +L+ +K +       WL EQI
Sbjct: 248 EESGYLVTLPRQAARLLAHSLPLNEFDVPLPMPSYKLTLMSYKPTENTSENLWLREQI 305