Pairwise Alignments

Query, 414 a.a., multidrug resistance protein D (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 401 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  127 bits (319), Expect = 6e-34
 Identities = 95/355 (26%), Positives = 165/355 (46%), Gaps = 26/355 (7%)

Query: 25  LLFMLVFMVACGQMAQTIFVPALPLIAQGLAVDASKLQAVMACYLLAYGLFQFIYGPLSD 84
           L  +L  + A   +A  +++PA+P IA+   V+A  +Q  +  Y   + + Q ++GPL+D
Sbjct: 18  LYIVLGALGALTPLAIDMYLPAMPTIARDFGVNAGAVQITLTAYTAGFAIGQLLHGPLAD 77

Query: 85  RYGRKLPLLIGIGIFIIGALLATQATSFNQLICASLLQGLGTASAGALCRSIPRDHYFGD 144
            +GR+  +L GI +F I A+++        L      QG   A+A  + +++ RD +  +
Sbjct: 78  SFGRRPVMLCGIFLFGIAAMVSATTNGIEALTYIRAAQGFAGAAAAVVIQAVVRDMFDRE 137

Query: 145 NLLKFNSYVSMAVVFLPLVAPFLGSLASAYFGWQAVYWVLFGFGVFVWLLLCFGFKESLP 204
           +  +  S+V++ V   PLVAP +G   + +FGW++++WVL  F   V  ++ +   E+L 
Sbjct: 138 DFARAMSFVTLVVTLAPLVAPMIGGHLAIWFGWRSIFWVLALFAALVIAMVMWKIPETLS 197

Query: 205 KDKREQ---QPVLASYRHVLRHRSFRAYLFSLIATFAGIAAFEAIAGVLYGQYLQLTPFM 261
            + R+    +  + +Y  + ++      +FS   +FAG+ AF      +Y          
Sbjct: 198 PENRQPLRFRSTMRNYFDLCKNPVAMGLIFSGAFSFAGMFAFLTAGAFVY---------- 247

Query: 262 VSCYFVAPIP-GYLLG----ALIAGRQKQAQRSVFQGVALLGAGALFMLIPGLFQLVVGW 316
           +  Y V+P   GYL G    A+IA      +     G   +   ALF+ +     L V W
Sbjct: 248 IDIYGVSPDGFGYLFGLNIVAMIALTTINGRFVKKIGSHNMLRFALFLQLMAGIGLFVSW 307

Query: 317 SLLVG-------SILFFSGAGMLFPTLTSAALEPFPRQAGIAGALLGGLQNFGAG 364
            L  G        +LF      +        L  +PR AG A +L G L+ FG G
Sbjct: 308 VLDWGLWGTVPFVVLFVGTISTIGSNSMGLLLSKYPRMAGTASSLAGTLR-FGTG 361