Pairwise Alignments

Query, 414 a.a., multidrug resistance protein D (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  146 bits (368), Expect = 1e-39
 Identities = 119/393 (30%), Positives = 187/393 (47%), Gaps = 10/393 (2%)

Query: 13  KASTPSAGSATRLLFMLVFMVACGQMAQTIFVPALPLIAQGLAVDASKLQAVMACYLLAY 72
           K + PS  S  +++ +L  +V    +A  I++PALP I+Q   V+ +  Q  +  +L A 
Sbjct: 2   KQAMPSQVSKQQMV-LLTLLVLFSPLAIDIYLPALPQISQAFHVEHALAQDTITWFLFAM 60

Query: 73  GLFQFIYGPLSDRYGRKLPLLIGIGIFIIGALLATQATSFNQLICASLLQGLGTASAGAL 132
           G+ Q   GPL+D+YGR+   L GI I+ + ALLA  A S   ++ A LLQGLG  +    
Sbjct: 61  GVGQLFAGPLADKYGRRTVALGGISIYALSALLAWSAQSIEWMLMARLLQGLGACATSVA 120

Query: 133 CRSIPRDHYFGDNLLKFNSYVSMAVVFLPLVAPFLGSLASAYFGWQAVYWVLFGFGVFVW 192
             +  RD +      K  SY++ A+ F+P +AP LGS  +  FGW+A +  + GF + V 
Sbjct: 121 AFATVRDLFGPQRSGKMISYLNGAICFIPALAPILGSWLTQQFGWRANFSFMTGFALLVG 180

Query: 193 LLLCFGFKESLP-KDKREQQPVLASYRHVLRHRSFRAYLFSLIATFAGIAAFEAIAGVLY 251
           L +    +ES P    R     L+ Y  VL+  +F  +    +   A I A+   A V+ 
Sbjct: 181 LAMALRLQESNPYMGSRPAVFKLSRYAAVLKAPTFLFHASLCLLAMAVILAYVTSAPVIL 240

Query: 252 GQYLQLTPFMVSCYFVAPIPGYLLGALIAGR--QKQAQR-SVFQGVALLGAGALFMLIPG 308
            + LQL+    + +F       ++  + A +   K   R S+  G+  L      ML+  
Sbjct: 241 MERLQLSMNEFTFWFGVNAVINIIACMTAPKVMDKLGTRWSLIIGITTLMIAGSLMLV-- 298

Query: 309 LFQLVVGWSLLVGSILFFSGAGMLFPTLTSAALEPFPRQAGIAGALLGGLQNFGAGLAAL 368
           L       + ++   L   G   +       AL PF  +AG A ALLG  Q  G+GL   
Sbjct: 299 LRNQASALAFMLPVFLSSIGFAWILGAAAGKALAPFGDKAGTAAALLGLFQMSGSGLLVG 358

Query: 369 TMSLVPMGGQLSIGL---LSAVMVLLVIVALHY 398
           T+  +    QL IGL   L+A  +L++   L +
Sbjct: 359 TLQRIMPEPQLLIGLTMWLAAPALLILFSPLGF 391