Pairwise Alignments

Query, 310 a.a., universal stress protein family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 315 a.a., universal stress protein UspE from Vibrio cholerae E7946 ATCC 55056

 Score =  344 bits (882), Expect = 2e-99
 Identities = 165/310 (53%), Positives = 222/310 (71%), Gaps = 2/310 (0%)

Query: 1   MKDYQKILVVVDPTTENQVALARAVTLASKSNA--HVTVFLSIFDFSYEMTSILSSQERE 58
           M  Y KILVV D   + Q ALARA+ LA KS +  H+T FLSI+DFSY+MTS+LS +ER+
Sbjct: 1   MSIYSKILVVADINHDEQPALARAMQLAQKSTSVSHITFFLSIYDFSYDMTSMLSLEERD 60

Query: 59  AMRQGVIDQRVAWIQDLLAPYNHLGLNIDTQVIWHNRPFESIINHAIAGQYDLIVKGTHA 118
           AMR+GVI QR  W++ +  PY    +  D +V+WHNRP+E+II    AG++D+++K T  
Sbjct: 61  AMRKGVIHQREQWMRSIAEPYLDKSVQFDIKVVWHNRPYEAIIGEIFAGEHDILIKATRK 120

Query: 119 HDKLKAVIFTPTDWHLMRKAPVPVLMVKDHDWPETGKILCAVNVATEDTDHQMLNGKIIE 178
           HD L++VIFTPTDWHLMRK P PVL+VK+ DWPE   I+ +V+V +E   H  LN +++E
Sbjct: 121 HDMLESVIFTPTDWHLMRKCPTPVLLVKNADWPENANIIASVHVGSELDTHIDLNDRMVE 180

Query: 179 HAKDLAGKFAAEVHLVNGFPGTPVNLAIELPDFDAQTYNDTIRLQHEQRVQYLADAYGID 238
              +L+ +  A  +LVN +P TP N+ IELP+FD  TY D +R  H   ++ L   +G+ 
Sbjct: 181 QLLNLSKRLGASPYLVNAYPVTPANITIELPEFDPTTYTDAVRGHHLTAMKALRQKHGLS 240

Query: 239 KQNCHVKEGLPEDVIPELAEQLDAELVILGTVGRTGFSAALIGNTAEHVIDSINCDLLAI 298
           ++   V++GLPEDVIPE A+QL+A +VILGT GRTG SA  IGNTAEHVID INCD+LA+
Sbjct: 241 EEQTLVQQGLPEDVIPEAAKQLNAAMVILGTTGRTGLSAVFIGNTAEHVIDKINCDVLAL 300

Query: 299 KPDGYKSPLE 308
           KP+GY SPL+
Sbjct: 301 KPNGYVSPLD 310