Pairwise Alignments

Query, 269 a.a., ISSod1, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 260 a.a., Integrase, catalytic region from Pseudomonas syringae pv. syringae B728a

 Score =  184 bits (466), Expect = 2e-51
 Identities = 111/262 (42%), Positives = 149/262 (56%), Gaps = 11/262 (4%)

Query: 3   VSKSGYYDWHKRPANVI-SVETLKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRYL 61
           +++S YYD+ K+   V    E LK+  +  QL  QSR S+G R +   L+  G QVGR+L
Sbjct: 1   MNRSRYYDYLKQRDRVDPDRERLKVEAI--QLHTQSRRSMGARSLSAALKARGEQVGRFL 58

Query: 62  VRKIMHRLRLKATQRCAYKVTTQRKHS---DAVADNLLNMNFNPVSANQVWAGDVTYLKT 118
             ++M    L++ QR         +HS      A+NLL   F   + NQVW GD+TY+  
Sbjct: 59  AGRLMAEAGLQSCQRRPRPY----RHSVVQSRFAENLLERQFEVSAPNQVWCGDITYIWA 114

Query: 119 GEGWMYLAVVMDLYSRRIVGWRIDKRMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYT 178
           G  W+YLA V+DLY+RRIVGW I     + L  KAL  A+  R     ++FHSD+G QY+
Sbjct: 115 GTRWVYLAAVLDLYARRIVGWAISSTPDSTLTCKALALAHEARGKPHKVMFHSDQGCQYS 174

Query: 179 SKQFGRLLSSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVAQPTREFMKQDVTAY- 237
           S+ F   L S G++ SM   G CWDNA +ERFFGSLK +WI K      E  + DV  Y 
Sbjct: 175 SEMFRTKLESLGMQQSMSRRGNCWDNAPMERFFGSLKSEWIPKKGYRNEEEARPDVLRYV 234

Query: 238 IKYYNLERLHSANNDLSPVEFE 259
           I +YN  RLHS N   +PV+ E
Sbjct: 235 IHHYNQVRLHSYNEYRTPVDQE 256